Flea peritrophin nucleic acid molecules

ABSTRACT

The present invention relates to flea peritrophin proteins; to flea peritrophin nucleic acid molecules, including those that encode such flea peritrophin proteins; to antibodies raised against such proteins; and to compounds that inhibit the activity of such proteins. The present invention also includes methods to obtain and use such proteins, nucleic acid molecules, antibodies, and inhibitory compounds. The present invention also includes therapeutic compositions comprising such inhibitory compounds, particularly those that specifically inhibit flea peritrophin activity, as well as the use of such therapeutic compositions to treat animals.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a divisional of U.S. patent application Ser. No.10/401,324, filed Mar. 27, 2003, now U.S. Pat. No. 7,247,447, entitled“FLEA PERITROPHIN NUCLEIC ACID MOLECULES, PROTEINS AND USES THEREOF”;which is a divisional of U.S. patent application Ser. No. 09/686,583,filed Oct. 11, 2000, now U.S. Pat. No. 6,576,750, entitled “FLEAPERITROPHIN NUCLEIC ACID MOLECULES, PROTEINS AND USES THEREOF”, which isa Continuation-in-Part of U.S. patent application Ser. No. 09/543,668,filed Apr. 7, 2000, now abandoned which claims priority to U.S.Provisional Patent Application Ser. No. 60/128,704, filed Apr. 9, 1999,each entitled “NOVEL FLEA HEAD, NERVE CORD, HINDGUT AND MALPIGHIANTUBULE NUCLEIC ACID MOLECULES, PROTEINS AND USES THEREOF”; all of whichare incorporated by reference herein.

FIELD OF THE INVENTION

The present invention relates to flea peritrophin nucleic acidmolecules, proteins encoded by such nucleic acid molecules, antibodiesraised against such proteins, and inhibitors of such proteins. Thepresent invention also includes methods to obtain such proteins, nucleicacid molecules, antibodies, and inhibitory compounds. The presentinvention also includes therapeutic compositions comprising suchinhibitors, as well as uses thereof.

BACKGROUND OF THE INVENTION

Flea infestation of animals is a health and economic concern for petowners. In particular, the bites of fleas are a problem for animalsmaintained as pets because the infestation becomes a source of annoyancenot only for the pet but also for the pet owner who may find his or herhome generally contaminated with insects. Fleas also directly cause avariety of diseases, including allergy, and also carry a variety ofinfectious agents including, but not limited to, endoparasites (e.g.,nematodes, cestodes, trematodes and protozoa), bacteria and viruses. Assuch, fleas are a problem not only when they are on an animal but alsowhen they are in the general environment of the animal.

The medical importance of flea infestation has prompted the developmentof reagents capable of controlling flea infestation. Commonlyencountered methods to control flea infestation are generally focused onuse of insecticides, which are often unsuccessful for one or more of thefollowing reasons: (1) failure of owner compliance (frequentadministration is required); (2) behavioral or physiological intoleranceof the pet to the pesticide product or means of administration; and (3)the emergence of flea populations resistant to the prescribed dose ofpesticide.

Peritrophins, including flea PL1, PL2, PL3, PL4 and PL5 proteins of thepresent invention, are a family of putative chitin-binding proteins thatcomprise a structural component of the peritrophic matrix, an acellularmembrane composed of proteins and sugars, most commonly chitin whichforms a barrier between the contents of an ingested meal and the gutepithelia. Peritrophin-like proteins have also been shown to be presentin the trachea of Drosophila embryos, indicating that such proteins mayhave additional roles outside the midgut. The function of theperitrophin-like proteins in adult fleas is not clear, since adult fleasdo not produce a peritrophic matrix in the gut. Peritrophins have beeninvestigated as targets for immunological control of hematophagousinsects including the sheep blowfly, Lucilia cuprina. It has been shownin this insect that ingestion of antibodies against peritrophinsinhibits the growth of larvae and can result in increased larvalmortality. It has also been shown that the ingestion of antibodiesagainst peritrophins reduces the permeability of the peritrophic matrixin L. cuprina larvae. This in turn may inhibit the movement of digestedfood across the peritrophic matrix to the gut epithelium, resulting instarvation. As such, a flea peritrophin of the present inventionrepresents a novel target for anti-flea vaccines and chemotherapeuticdrugs.

Therefore, isolation and sequencing of flea peritrophin genes may becritical for use in identifying specific agents for treating animals forflea infestation.

SUMMARY OF THE INVENTION

The present invention provides flea peritrophin nucleic acid molecules,proteins encoded by such nucleic acid molecules; antibodies raisedagainst such proteins (i.e., anti-flea peritrophin antibodies);mimetopes of such proteins or antibodies; compositions comprising suchnucleic acid molecules, proteins, antibodies, and mimetopes; andcompounds that inhibit flea peritrophin activity (i.e. inhibitorycompounds or inhibitors).

The present invention also includes methods to obtain such proteins,mimetopes, nucleic acid molecules, antibodies and inhibitory compounds.The present invention also includes the use of proteins and antibodiesto identify such inhibitory compounds as well as assay kits to identifysuch inhibitory compounds. Also included in the present invention aretherapeutic compositions comprising proteins, mimetopes, nucleic acidmolecules, antibodies and inhibitory compounds of the present inventionincluding therapeutic compounds derived from a protein of the presentinvention that inhibit the activity of flea peritrophin proteins; alsoincluded are uses of such therapeutic compounds.

One embodiment of the present invention is an isolated flea peritrophinnucleic acid molecule that hybridizes with a nucleic acid sequencehaving SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6,SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ IDNO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ IDNO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ IDNO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ IDNO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ IDNO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47, and/orSEQ ID NO:49, under conditions that allow less than or equal to 30% basepair mismatch. Another embodiment of the present invention is anisolated flea peritrophin nucleic acid molecule having a nucleic acidsequence that is at least 70% identical to SEQ ID NO:1, SEQ ID NO:3, SEQID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ IDNO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ IDNO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ IDNO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ IDNO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ IDNO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ IDNO:45, SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49 and fragments ofany of such nucleic acid sequences of at least 35 nucleotides in length.

The present invention also relates to recombinant molecules, recombinantviruses and recombinant cells that include a nucleic acid molecule ofthe present invention. Also included are methods to produce such nucleicacid molecules, recombinant molecules, recombinant viruses andrecombinant cells.

Another embodiment of the present invention includes an isolated fleaperitrophin protein that is at least 70% identical to an amino acidsequence selected from the group consisting of SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO: 17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ IDNO:43, and/or SEQ ID NO:48 and fragments thereof having at least 10amino acid residues, wherein such fragments can elicit an immuneresponse against respective flea peritrophin proteins or selectivelybinds to an antibody that binds any of such amino acid sequences.

Another embodiment of the present invention includes an isolated fleaperitrophin protein encoded by a nucleic acid molecule at least 35nucleotides in length that hybridizes with a nucleic acid sequencehaving SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:10, SEQ IDNO:13, SEQ ID NO:15, SEQ ID NO:18, SEQ ID NO:20, SEQ ID NO:22, SEQ IDNO:24, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:41, SEQ IDNO:44, SEQ ID NO:46, and/or SEQ ID NO:49, under conditions that allowless than or equal to 30% base pair mismatch.

Another embodiment of the present invention includes a compositioncomprising an excipient and a compound selected from the groupconsisting of nucleic acid molecules, proteins, and antibodies of thepresent invention and a method to treat an animal for flea infestationcomprising administering such a composition to such an animal.

Another embodiment of the present invention includes a method to detectan inhibitor of flea peritrophin activity, said method comprising (a)contacting an isolated flea peritrophin protein of the presentinvention, with a putative inhibitory compound under conditions inwhich, in the absence of said compound, said protein has fleaperitrophin protein activity, and (b) determining if said putativeinhibitory compound inhibits flea peritrophin protein activity.

DETAILED DESCRIPTION OF THE INVENTION

The present invention provides for flea peritrophin nucleic acidmolecules, proteins encoded by such nucleic acid molecules, antibodiesraised against such proteins, and inhibitors of such proteins. As usedherein, flea peritrophin nucleic acid molecules and proteins encoded bysuch nucleic acid molecules are also referred to as peritrophin nucleicacid molecules and proteins, or PL nucleic acid molecules and PLproteins, respectively. Flea peritrophin nucleic acid molecules andproteins of the present invention can be isolated from a flea orprepared recombinantly or synthetically. Flea peritrophin nucleic acidmolecules of the present invention can be RNA or DNA, or modified formsthereof, and can be double-stranded or single-stranded; examples ofnucleic acid molecules include, but are not limited to, complementaryDNA (cDNA) molecules, genomic DNA molecules, synthetic DNA molecules,DNA molecules which are specific tags for messenger RNA, andcorresponding mRNA molecules. As such, a flea nucleic acid molecule ofthe present invention is not intended refer to an entire chromosomewithin which such a nucleic acid molecule is contained, however, a fleaperitrophin cDNA of the present invention may include all regions suchas regulatory regions that control production of flea peritrophinproteins encoded by such a cDNA (such as, but not limited to,transcription, translation or post-translation control regions) as wellas the coding region itself, and any introns or non-translated codingregions. As used herein, the phrase “flea peritrophin protein” refers toa protein encoded by a flea peritrophin nucleic acid molecule.

Peritrophins, including flea PL1, PL2, PL3, PL4 and PL5 proteins of thepresent invention, are a family of putative chitin-binding proteins thatcomprise a structural component of the peritrophic matrix, an acellularmembrane composed of proteins and sugars, most commonly chitin whichforms a barrier between the contents of an ingested meal and the gutepithelia. Flea peritrophin proteins of the present invention arecharacterized as containing a 6 cysteine motif including a highlyconserved motif at cysteine 2 through cysteine 3 of “CNNYYNC”, where “N”represents any amino acid residue and “Y” represents an aromatic aminoacid residue.

Flea peritrophin nucleic acid molecules of known length isolated from aflea, such as Ctenocephalides felis are denoted “nCfPL1_(#)”, forexample nCfPL1₁₀₉₆, wherein “#” refers to the number of nucleotides inthat molecule, and flea peritrophin proteins of known length are denoted“PCfPL1_(#)” (for example PCfPL1₂₇₂) wherein “#” refers to the number ofamino acid residues in that molecule.

The present invention also provides for flea peritrophin DNA moleculesthat are specific tags for messenger RNA molecules. Such DNA moleculescan correspond to an entire or partial sequence of a messenger RNA, andtherefore, a DNA molecule corresponding to such a messenger RNA molecule(i.e. a cDNA molecule), can encode a full-length or partial-lengthprotein. A nucleic acid molecule encoding a partial-length protein canbe used directly as a probe or indirectly to generate primers toidentify and/or isolate a cDNA nucleic acid molecule encoding acorresponding, or structurally related, full-length protein. Such apartial cDNA nucleic acid molecule can also be used in a similar mannerto identify a genomic nucleic acid molecule, such as a nucleic acidmolecule that contains the complete gene including regulatory regions,exons and introns. Methods for using partial flea peritrophin cDNAmolecules and sequences to isolate full-length and corresponding cDNAmolecules are described in the examples herein below.

The proteins and nucleic acid molecules of the present invention can beobtained from their natural source, or can be produced using, forexample, recombinant nucleic acid technology or chemical synthesis. Alsoincluded in the present invention is the use of these proteins andnucleic acid molecules as well as antibodies and inhibitory compoundsthereto as therapeutic compositions to protect animals from fleainfestation as well as in other applications, such as those disclosedbelow.

One embodiment of the present invention is an isolated protein thatincludes a flea peritrophin protein. It is to be noted that the term “a”or “an” entity refers to one or more of that entity; for example, aprotein, a nucleic acid molecule, an antibody and a therapeuticcomposition refers to “one or more” or “at least one” protein, nucleicacid molecule, antibody and therapeutic composition respectively. Assuch, the terms “a” (or “an”), “one or more” and “at least one” can beused interchangeably herein. It is also to be noted that the terms“comprising”, “including”, and “having” can be used interchangeably.According to the present invention, an isolated, or biologically pure,protein, is a protein that has been removed from its natural milieu. Assuch, “isolated” and “biologically pure” do not necessarily reflect theextent to which the protein has been purified. An isolated protein ofthe present invention can be obtained from its natural source, can beproduced using recombinant DNA technology, or can be produced bychemical synthesis.

As used herein, isolated flea peritrophin proteins of the presentinvention can be full-length proteins or any homologue of such proteins.An isolated protein of the present invention, including a homologue, canbe identified in a straight-forward manner by the protein's ability toelicit an immune response against a flea peritrophin protein or by theprotein's ability to exhibit flea peritrophin activity. Examples of fleaperitrophin homologue proteins include flea peritrophin proteins inwhich amino acids have been deleted (e.g., a truncated version of theprotein, such as a peptide), inserted, inverted, substituted and/orderivatized (e.g., by glycosylation, phosphorylation, acetylation,myristoylation, prenylation, palmitoylation, amidation and/or additionof glycerophosphatidyl inositol) such that the homologue includes atleast one epitope capable of eliciting an immune response against a fleaperitrophin protein, and/or of binding to an antibody directed against aflea peritrophin protein. That is, when the homologue is administered toan animal as an immunogen, using techniques known to those skilled inthe art, the animal will produce an immune response against at least oneepitope of a natural flea peritrophin protein. The ability of a proteinto effect an immune response can be measured using techniques known tothose skilled in the art. As used herein, the term “epitope” refers tothe smallest portion of a protein or other antigen capable ofselectively binding to the antigen binding site of an antibody or a Tcell receptor. It is well accepted by those skilled in the art that theminimal size of a protein epitope is about four to six amino acids. Asis appreciated by those skilled in the art, an epitope can include aminoacids that naturally are contiguous to each other as well as amino acidsthat, due to the tertiary structure of the natural protein, are insufficiently close proximity to form an epitope. According to thepresent invention, an epitope includes a portion of a protein comprisingat least 4 amino acids, at least 5 amino acids, at least 6 amino acids,at least 10 amino acids, at least 15 amino acids, at least 20 aminoacids, at least 25 amino acids, at least 30 amino acids, at least 35amino acids, at least 40 amino acids or at least 50 amino acids inlength.

Flea peritrophin homologue proteins can be the result of natural allelicvariation or natural mutation. Flea peritrophin protein homologues ofthe present invention can also be produced using techniques known in theart including, but not limited to, direct modifications to the proteinor modifications to the gene encoding the protein using, for example,classic or recombinant DNA techniques to effect random or targetedmutagenesis.

Flea peritrophin proteins of the present invention are encoded by fleaperitrophin nucleic acid molecules. As used herein, flea peritrophinnucleic acid molecules include nucleic acid sequences related to naturalflea peritrophin genes, and, preferably, to C. felis flea peritrophingenes. As used herein, flea peritrophin genes include all regions suchas regulatory regions that control production of flea peritrophinproteins encoded by such genes (such as, but not limited to,transcription, translation or post-translation control regions) as wellas the coding region itself, and any introns or non-translated codingregions. As used herein, a nucleic acid molecule that “includes” or“comprises” a sequence may include that sequence in one contiguousarray, or may include the sequence as fragmented exons such as is oftenfound for a flea gene. As used herein, the term “coding region” refersto a continuous linear array of nucleotides that translates into aprotein. A full-length coding region is that coding region that istranslated into a full-length, i.e., a complete protein as would beinitially translated in its natural millieu, prior to anypost-translational modifications.

One embodiment of the present invention is a C. felis flea peritrophingene that includes the nucleic acid sequence SEQ ID NO:1, SEQ ID NO:3,SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ IDNO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ IDNO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ IDNO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ IDNO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ IDNO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ IDNO:45, SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49. These nucleicacid sequences are further described herein. For example, nucleic acidsequence SEQ ID NO:1 represents the deduced sequence of the codingstrand of a C. felis cDNA denoted herein as C. felis peritrophin nucleicacid molecule nCfPL1₁₀₉₆, the production of which is disclosed in theExamples. Nucleic acid molecule SEQ ID NO:1 comprises an apparentlyfull-length coding region. The complement of SEQ ID NO:1 (representedherein by SEQ ID NO:3) refers to the nucleic acid sequence of the strandfully complementary to the strand having SEQ ID NO:1, which can easilybe determined by those skilled in the art. Likewise, a nucleic acidsequence complement of any nucleic acid sequence of the presentinvention refers to the nucleic acid sequence of the nucleic acid strandthat is fully complementary to (i.e., can form a complete double helixwith) the strand for which the sequence is cited. It should be notedthat since nucleic acid sequencing technology is not entirelyerror-free, SEQ ID NO:1 (as well as other nucleic acid and proteinsequences presented herein) represents an apparent nucleic acid sequenceof the nucleic acid molecule encoding a flea peritrophin protein of thepresent invention.

Translation of SEQ ID NO:1, the coding strand of nCfPL1₁₀₉₆, as well astranslation of SEQ ID NO:4, the coding strand of nCfPL1₈₁₆, whichrepresents the coding region of nCfPL1₁₀₉₆, yields a protein of 272amino acids, denoted herein as PCfPL1₂₇₂, the amino acid sequence ofwhich is presented in SEQ ID NO:2, assuming (a) an initiation codonextending from nucleotide 6 to 8 of SEQ ID NO:1, or from nucleotide 1 tonucleotide 3 of SEQ ID NO:4, respectively; and (b) a stop codonextending from nucleotide 822 to 824 of SEQ ID NO:1.

Translation of SEQ ID NO:11, the coding strand of nCfPL2₁₄₆₅, as well astranslation of SEQ ID NO:14, the coding strand of nCfPL2₁₃₅₉, whichrepresents the coding region of nCfPL2₁₄₆₅, yields a protein of 453amino acids, denoted herein as PCfPL2₄₅₃, the amino acid sequence ofwhich is presented in SEQ ID NO:12, assuming (a) an initiation codonextending from nucleotide 3 to 5 of SEQ ID NO:11, or from nucleotide 1to nucleotide 3 of SEQ ID NO:14, respectively; and (b) a stop codonextending from nucleotide 1362 to 1364 of SEQ ID NO:11.

Translation of SEQ ID NO:16, the coding strand of nCfPL3₃₈₇, as well astranslation of SEQ ID NO:19, the coding strand of nCfPL3₂₄₃, whichrepresents the coding region of nCfPL3₃₈₇, yields a protein of 81 aminoacids, denoted herein as PCfPL3₈₁, the amino acid sequence of which ispresented in SEQ ID NO:17, assuming (a) an initiation codon extendingfrom nucleotide 20-22 of SEQ ID NO:16, or from nucleotide 1 tonucleotide 3 of SEQ ID NO:19, respectively; and (b) a stop codonextending from nucleotide 263 to 265 of SEQ ID NO:16.

Translation of SEQ ID NO:25, the coding strand of nCfPL4₁₀₄₈, as well astranslation of SEQ ID NO:28, the coding strand of nCfPL4₈₅₅, whichrepresents the coding region of nCfPL4₁₀₄₈, yields a protein of 285amino acids, denoted herein as PCfPL4₂₈₅, the amino acid sequence ofwhich is presented in SEQ ID NO:26, assuming (a) an initiation codonextending from nucleotide 19-21 of SEQ ID NO:25, or from nucleotide 1 tonucleotide 3 of SEQ ID NO:28, respectively; and (b) a stop codonextending from nucleotide 874 to 876 of SEQ ID NO:25.

Translation of SEQ ID NO:42, the coding strand of nCfPL5₁₈₃₂, as well astranslation of SEQ ID NO:45, the coding strand of nCfPL5₁₁₉₁, whichrepresents the coding region of nCfPL5₁₈₃₂, yields a protein of 397amino acids, denoted herein as PCfPL5₃₉₇, the amino acid sequence ofwhich is presented in SEQ ID NO:43, assuming (a) an initiation codonextending from nucleotide 146-148 of SEQ ID NO:42, or from nucleotide 1to nucleotide 3 of SEQ ID NO:45, respectively; and (b) a stop codonextending from nucleotide 1337 to 1339 of SEQ ID NO:42.

In one embodiment, a gene or other nucleic acid molecule of the presentinvention can be an allelic variant that includes a similar but notidentical sequence to SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQ IDNO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10,SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16,SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22,SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28,SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34,SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39,SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46,SEQ ID NO:47, and/or SEQ ID NO:49. For example, an allelic variant of aC. felis peritrophin gene including SEQ ID NO:1, SEQ ID NO:3, SEQ IDNO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9,SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15,SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21,SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27,SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33,SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38,SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45,SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49 is a gene that occurs atessentially the same locus (or loci) in the genome as the gene includingSEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ IDNO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ IDNO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ IDNO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ IDNO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ IDNO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ IDNO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ IDNO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47, and/orSEQ ID NO:49, but which, due to natural variations caused by, forexample, mutation or recombination, has a similar but not identicalsequence. Because natural selection typically selects againstalterations that affect function, allelic variants (i.e. allelescorresponding to, or of, cited nucleic acid sequences) usually encodeproteins having similar activity to that of the protein encoded by thegene to which they are being compared. Allelic variants of genes ornucleic acid molecules can also comprise alterations in the 5′ or 3′untranslated regions of the gene (e.g., in regulatory control regions),or can involve alternative splicing of a nascent transcript, therebybringing alternative exons into juxtaposition. Allelic variants are wellknown to those skilled in the art and would be expected to occurnaturally within a given flea species, since the genome is diploid, andsexual reproduction will result in the reassortment of alleles.

In one embodiment of the present invention, isolated flea peritrophinproteins are encoded by nucleic acid molecules that hybridize understringent hybridization conditions to genes or other nucleic acidmolecules encoding flea peritrophin proteins, respectively. The minimalsize of flea peritrophin proteins of the present invention is a sizesufficient to be encoded by a nucleic acid molecule capable of forming astable hybrid (i.e., hybridizing under stringent hybridizationconditions) with the complementary sequence of a nucleic acid moleculeencoding the corresponding natural protein. The size of a nucleic acidmolecule encoding such a protein is dependent on the nucleic acidcomposition and the percent homology between the flea peritrophinnucleic acid molecule and the complementary nucleic acid sequence. Itcan easily be understood that the extent of homology required to form astable hybrid under stringent conditions can vary depending on whetherthe homologous sequences are interspersed throughout a given nucleicacid molecule or are clustered (i.e., localized) in distinct regions ona given nucleic acid molecule.

The minimal size of a nucleic acid molecule capable of forming a stablehybrid with a gene encoding a flea peritrophin protein is at least about12 to about 15 nucleotides in length if the nucleic acid molecule isGC-rich and at least about 15 to about 17 bases in length if it isAT-rich. The minimal size of a nucleic acid molecule used to encode aflea peritrophin protein homologue of the present invention is fromabout 12 to about 18 nucleotides in length. Thus, the minimal size offlea peritrophin protein homologues of the present invention is fromabout 4 to about 6 amino acids in length. There is no limit, other thana practical limit, on the maximal size of a nucleic acid moleculeencoding a flea peritrophin protein of the present invention because anucleic acid molecule of the present invention can include a portion ofa gene or cDNA or RNA, an entire gene or cDNA or RNA, or multiple genesor cDNA or RNA. The preferred size of a protein encoded by a nucleicacid molecule of the present invention depends on whether a full-length,fusion, multivalent, or functional portion of such a protein is desired.

Stringent hybridization conditions are determined based on definedphysical properties of the flea peritrophin nucleic acid molecule towhich the nucleic acid molecule is being hybridized, and can be definedmathematically. Stringent hybridization conditions are thoseexperimental parameters that allow an individual skilled in the art toidentify significant similarities between heterologous nucleic acidmolecules. These conditions are well known to those skilled in the art.See, for example, Sambrook, et al., 1989, Molecular Cloning: ALaboratory Manual, Cold Spring Harbor Labs Press, and Meinkoth, et al.,1984, Anal. Biochem. 138, 267-284, each of which is incorporated byreference herein in its entirety. As explained in detail in the citedreferences, the determination of hybridization conditions involves themanipulation of a set of variables including the ionic strength (M, inmoles/liter), the hybridization temperature (° C.), the concentration ofnucleic acid helix destabilizing agents (such as formamide), the averagelength of the shortest hybrid duplex (n), and the percent G+Ccomposition of the fragment to which an unknown nucleic acid molecule isbeing hybridized. For nucleic acid molecules of at least about 150nucleotides, these variables are inserted into a standard mathematicalformula to calculate the melting temperature, or T_(m), of a givennucleic acid molecule. As defined in the formula below, T_(m) is thetemperature at which two complementary nucleic acid molecule strandswill disassociate, assuming 100% complementarity between the twostrands:T _(m)=81.5° C.+16.6 log M+0.41(% G+C)−500/n−0.61(% formamide).For nucleic acid molecules smaller than about 50 nucleotides, hybridstability is defined by the dissociation temperature (T_(d)), which isdefined as the temperature at which 50% of the duplexes dissociate. Forthese smaller molecules, the stability at a standard ionic strength isdefined by the following equation:T _(d)=4(G+C)+2(A+T).A temperature of 5° C. below T_(d) is used to detect hybridizationbetween perfectly matched molecules.

Also well known to those skilled in the art is how base pair mismatch,i.e. differences between two nucleic acid molecules being compared,including non-complementarity of bases at a given location, and gaps dueto insertion or deletion of one or more bases at a given location oneither of the nucleic acid molecules being compared, will affect T_(m)or T_(d) for nucleic acid molecules of different sizes. For example,T_(m) decreases about 1° C. for each 1% of mismatched base pairs forhybrids greater than about 150 bp, and T_(d) decreases about 5° C. foreach mismatched base pair for hybrids below about 50 bp. Conditions forhybrids between about 50 and about 150 base pairs can be determinedempirically and without undue experimentation using standard laboratoryprocedures well known to those skilled in the art. These simpleprocedures allow one skilled in the art to set the hybridizationconditions (by altering, for example, the salt concentration, the helixdestabilizing compound concentration or the temperature) so that onlynucleic acid hybrids with greater than a specified % base pair mismatchwill hybridize. Because one skilled in the art can easily determinewhether a given nucleic acid molecule to be tested is less than orgreater than about 50 nucleotides, and can therefore choose theappropriate formula for determining hybridization conditions, he or shecan determine whether the nucleic acid molecule will hybridize with agiven gene under conditions designed to allow a desired amount of basepair mismatch.

Hybridization reactions are often carried out by attaching the nucleicacid molecule to be hybridized to a solid support such as a membrane,and then hybridizing with a labeled nucleic acid molecule, typicallyreferred to as a probe, suspended in a hybridization solution. Examplesof common hybridization reaction techniques include, but are not limitedto, the well-known Southern and northern blotting procedures. Typically,the actual hybridization reaction is done under non-stringentconditions, i.e., at a lower temperature and/or a higher saltconcentration, and then high stringency is achieved by washing themembrane in a solution with a higher temperature and/or lower saltconcentration in order to achieve the desired stringency.

For example, if the skilled artisan wished to identify a nucleic acidmolecule that hybridizes under conditions that would allow less than orequal to 30% pair mismatch with a flea peritrophin nucleic acid moleculeof about 150 bp in length or greater, the following conditions couldpreferably be used. The average G+C content of flea DNA is about 37%, ascalculated from known flea nucleic acid sequences. The unknown nucleicacid molecules would be attached to a support membrane, and the 150 bpprobe would be labeled, e.g. with a radioactive tag. The hybridizationreaction could be carried out in a solution comprising 2×SSC in theabsence of nucleic acid helix destabilizing compounds, at a temperatureof about 37° C. (low stringency conditions). Solutions of differingconcentrations of SSC can be made by one of skill in the art by dilutinga stock solution of 20×SSC (175.3 gram NaCl and about 88.2 gram sodiumcitrate in 1 liter of water, pH 7) to obtain the desired concentrationof SSC. The skilled artisan would calculate the washing conditionsrequired to allow up to 30% base pair mismatch. For example, in a washsolution comprising 1×SSC in the absence of nucleic acid helixdestabilizing compounds, the T_(m) of perfect hybrids would be about 77°C.:81.5° C.+16.6 log(0.15M)+(0.41×73)−(500/150)−(0.61×0)=77.5° C.Thus, to achieve hybridization with nucleic acid molecules having about30% base pair mismatch, hybridization washes would be carried out at atemperature of less than or equal to 47.5° C. It is thus within theskill of one in the art to calculate additional hybridizationtemperatures based on the desired percentage base pair mismatch,formulae and G/C content disclosed herein. For example, it isappreciated by one skilled in the art that as the nucleic acid moleculeto be tested for hybridization against nucleic acid molecules of thepresent invention having sequences specified herein becomes longer than150 nucleotides, the T_(m) for a hybridization reaction allowing up to30% base pair mismatch will not vary significantly from 47.5° C.

Furthermore, it is known in the art that there are commerciallyavailable computer programs for determining the degree of similaritybetween two nucleic acid or protein sequences. These computer programsinclude various known methods to determine the percentage identity andthe number and length of gaps between hybrid nucleic acid molecules orproteins. Preferred methods to determine the percent identity amongamino acid sequences and also among nucleic acid sequences includeanalysis using one or more of the commercially available computerprograms designed to compare and analyze nucleic acid or amino acidsequences. These computer programs include, but are not limited to, theSeqLab® Wisconsin Package™ Version 10.0-UNIX sequence analysis software,available from Genetics Computer Group, Madison, Wis. (hereinafter“SeqLab”); and DNAsis® sequence analysis software, version 2.0,available from Hitachi Software, San Bruno, Calif. (hereinafter“DNAsis”). Such software programs represent a collection of algorithmspaired with a graphical user interface for using the algorithms. TheDNAsis and SeqLab software, for example, employ a particular algorithm,the Needleman-Wunsch algorithm to perform pair-wise comparisons betweentwo sequences to yield a percentage identity score, see Needleman, S. B.and Wunch, C. D., 1970, J. Mol. Biol., 48, 443, which is incorporatedherein by reference in its entirety. Such algorithms, including theNeedleman-Wunsch algorithm, are commonly used by those skilled in thenucleic acid and amino acid sequencing art to compare sequences. Apreferred method to determine percent identity among amino acidsequences and also among nucleic acid sequences includes using theNeedleman-Wunsch algorithm, available in the SeqLab software, using thePairwise Comparison/Gap function with the nwsgapdna.cmp scoring matrix,the gap creation penalty and the gap extension penalties set at defaultvalues, and the gap shift limits set at maximum (hereinafter referred toas “SeqLab default parameters”). An additional preferred method todetermine percent identity among amino acid sequences and also amongnucleic acid sequences includes using the Higgins-Sharp algorithm,available in the DNAsis software, with the gap penalty set at 5, thenumber of top diagonals set at 5, the fixed gap penalty set at 10, thek-tuple set at 2, the window size set at 5, and the floating gap penaltyset at 10. A particularly preferred method to determine percent identityamong amino acid sequences and also among nucleic acid sequencesincludes using the Needleman-Wunsch algorithm available in the SeqLabsoftware, using the SeqLab default parameters.

One embodiment of the present invention includes a flea peritrophinprotein. A preferred flea peritrophin protein includes a protein encodedby a nucleic acid molecule that hybridizes under conditions thatpreferably allow less than or equal to 30% base pair mismatch,preferably under conditions that allow less than or equal to 20% basepair mismatch, preferably under conditions that allow less than or equalto 10% base pair mismatch, preferably under conditions that allow lessthan or equal to 8% base pair mismatch, preferably under conditions thatallow less than or equal to 5% base pair mismatch or preferably underconditions that allow less than or equal to 2% base pair mismatch with anucleic acid molecule selected from the group consisting of SEQ ID NO:3,SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:10, SEQ ID NO:13, SEQ ID NO:15, SEQID NO:18, SEQ ID NO:20, SEQ ID NO:22, SEQ ID NO:24, SEQ ID NO:27, SEQ IDNO:29, SEQ ID NO:32, SEQ ID NO:41, SEQ ID NO:44, SEQ ID NO:46, and/orSEQ ID NO:49.

Another embodiment of the present invention includes a flea peritrophinprotein encoded by a nucleic acid molecule that hybridizes underconditions comprising, (a) hybridizing in a solution comprising 1×SSC inthe absence of nucleic acid helix destabilizing compounds, at atemperature of 37° C. and (b) washing in a solution comprising 1×SSC inthe absence of nucleic acid helix destabilizing compounds, at atemperature of 47° C., to an isolated nucleic acid molecule selectedfrom the group consisting of SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:8, SEQID NO:10, SEQ ID NO:13, SEQ ID NO:15, SEQ ID NO:18, SEQ ID NO:20, SEQ IDNO:22, SEQ ID NO:24, SEQ ID NO:27, SEQ ID NO:29, SEQ ID NO:32, SEQ IDNO:41, SEQ ID NO:44, SEQ ID NO:46, and/or SEQ ID NO:49.

Another preferred flea peritrophin protein of the present inventionincludes a protein that is encoded by a nucleic acid molecule that ispreferably at least 70% identical, preferably at least 80% identical,preferably at least 90% identical, preferably at least 92% identical,preferably at least 95% identical or preferably at least 98% identicalto a nucleic acid molecule having the nucleic acid sequence SEQ ID NO:1,SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:9, SEQ ID NO:11, SEQ IDNO:14, SEQ ID NO:16, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:23, SEQ IDNO:25, SEQ ID NO:28, SEQ ID NO:30, SEQ ID NO:33, SEQ ID NO:34, SEQ IDNO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ IDNO:42, SEQ ID NO:45, and/or SEQ ID NO:47; also preferred are fragments(i.e. portions) of such proteins encoded by nucleic acid molecules thatare at least 25 nucleotides. Percent identity as used herein isdetermined using the Needleman-Wunsch algorithm, available in the SeqLabsoftware using default parameters.

Additional preferred flea peritrophin proteins of the present inventioninclude proteins having the amino acid sequence SEQ ID NO:2, SEQ IDNO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ IDNO:43, and/or SEQ ID NO:48, and proteins comprising homologues of aprotein having the amino acid sequence SEQ ID NO:2, SEQ ID NO:12, SEQ IDNO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43, and/orSEQ ID NO:48, wherein such a homologue comprises at least one epitopethat elicits an immune response against a protein having an amino acidsequence SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ IDNO:31, SEQ ID NO:40, SEQ ID NO:43, and/or SEQ ID NO:48. Likewise, alsopreferred are proteins encoded by nucleic acid molecules comprisingnucleic acid sequence SEQ ID NO:1, SEQ ID NO:4, SEQ ID NO:6, SEQ IDNO:7, SEQ ID NO:9, SEQ ID NO:11, SEQ ID NO:14, SEQ ID NO:16, SEQ IDNO:19, SEQ ID NO:21, SEQ ID NO:23, SEQ ID NO:25, SEQ ID NO:28, SEQ IDNO:30, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ IDNO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:42, SEQ ID NO:45, and/orSEQ ID NO:47, or by homologues thereof.

A preferred isolated flea peritrophin protein of the present inventionis a protein encoded by at least one of the following nucleic acidmolecules: nCfPL1₁₀₉₆, nCfPL1₈₁₆, nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉,nCfPL2₁₄₆₅, nCfPL2₁₃₅₉, nCfPL3₃₈₇, nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉,nCfPL4₁₀₄₈, nCfPL4₈₃₅, nCfPL4₈₀₂, nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁,and/or nCfPL5₁₁₆₁, or allelic variants of any of these nucleic acidmolecules. Also preferred is an isolated protein encoded by a nucleicacid molecule having nucleic acid sequence SEQ ID NO:1, SEQ ID NO:4, SEQID NO:6, SEQ ID NO:7, SEQ ID NO:9, SEQ ID NO:11, SEQ ID NO:14, SEQ IDNO:16, SEQ ID NO:19, SEQ ID NO:21, SEQ ID NO:23, SEQ ID NO:25, SEQ IDNO:28, SEQ ID NO:30, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ IDNO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:42, SEQ IDNO:45, and/or SEQ ID NO:47; or a protein encoded by an allelic variantof any of these listed nucleic acid molecules.

Preferred flea peritrophin proteins of the present invention includeproteins having amino acid sequences that are at least 70%, preferably80%, preferably 90%, preferably 92%, preferably 95%, preferably at least98%, preferably at least 99%, or preferably 100% identical to amino acidsequence SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ IDNO:31, SEQ ID NO:40, SEQ ID NO:43, and/or SEQ ID NO:48; and proteinsencoded by allelic variants of nucleic acid molecules encoding fleaperitrophin proteins having amino acid sequences SEQ ID NO:2, SEQ IDNO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ IDNO:43, and/or SEQ ID NO:48. Also preferred are fragments thereof havingat least 10 amino acid residues.

In one embodiment of the present invention, C. felis peritrophinproteins comprise amino acid sequence SEQ ID NO:2, SEQ ID NO:12, SEQ IDNO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43, and/orSEQ ID NO:48 (including, but not limited to, the proteins consisting ofamino acid sequence SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO:17, SEQ IDNO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43, and/or SEQ ID NO:48,fusion proteins and multivalent proteins), and proteins encoded byallelic variants of nucleic acid molecules encoding proteins havingamino acid sequence SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO:17, SEQ IDNO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43, and/or SEQ ID NO:48.

In one embodiment, a preferred flea peritrophin protein comprises anamino acid sequence of at least 6 amino acids, preferably at least 10amino acids, preferably at least 15 amino acids, preferably at least 20amino acids, preferably at least 25 amino acids, preferably at least 30amino acids, preferably at least 35 amino acids, preferably at least 40amino acids, preferably at least 50 amino acids, preferably at least 75amino acids, preferably at least 100 amino acids, preferably at least125 amino acids, preferably at least 150 amino acids, preferably atleast 175 amino acids, preferably at least 200 amino acids, preferablyat least 250 amino acids, preferably at least 300 amino acids,preferably at least 350 amino acids, preferably at least 400 aminoacids, or preferably at least 450 amino acids. In another embodiment,preferred flea peritrophin proteins comprise full-length proteins, i.e.,proteins encoded by full-length coding regions, or post-translationallymodified proteins thereof, such as mature proteins from which initiatingmethionine and/or signal sequences or “pro” sequences have been removed.

Additional preferred flea peritrophin proteins of the present inventioninclude proteins encoded by nucleic acid molecules comprising at least aportion of nCfPL1₁₀₉₆, nCfPL1₈₁₆, nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉,nCfPL2₁₄₆₅, nCfPL2₁₃₅₉, nCfPL3₃₈₇, nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉,nCfPL4₁₀₄₈, nCfPL4₈₅₅, nCfPL4₈₀₂, nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁,and/or nCfPL5₁₁₆₁, as well as flea peritrophin proteins encoded byallelic variants of such nucleic acid molecules. A portion of such fleaperitrophin nucleic acid molecule is preferably at least 25 nucleotidesin length.

Also preferred are flea peritrophin proteins encoded by nucleic acidmolecules having nucleic acid sequences comprising at least a portion ofSEQ ID NO:1, SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:9, SEQ IDNO:11, SEQ ID NO:14, SEQ ID NO:16, SEQ ID NO:19, SEQ ID NO:21, SEQ IDNO:23, SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:30, SEQ ID NO:33, SEQ IDNO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ IDNO:39, SEQ ID NO:42, SEQ ID NO:45, and/or SEQ ID NO:47, as well asallelic variants of these nucleic acid molecules. A portion of such fleaperitrophin nucleic acid molecule is preferably at least 25 nucleotidesin length.

In another embodiment, a preferred flea peritrophin protein of thepresent invention is encoded by a nucleic acid molecule comprising atleast 20 nucleotides, preferably at least 25 nucleotides, preferably atleast 30 nucleotides, preferably at least 40 nucleotides, preferably atleast 50 nucleotides, preferably at least 75 nucleotides, preferably atleast 100 nucleotides, preferably at least 125 nucleotides, preferablyat least 150 nucleotides, preferably at least 175 nucleotides,preferably at least 200 nucleotides, preferably at least 250nucleotides, preferably at least 350 nucleotides, preferably at least450 nucleotides, preferably at least 550 nucleotides, preferably atleast 650 nucleotides, preferably at least 750 nucleotides, preferablyat least 1000 nucleotides, preferably at least 1100 nucleotides,preferably at least 1200 nucleotides, preferably at least 1500nucleotides, preferably at least 1750 nucleotides, or preferably atleast 1850 nucleotides in length. Within this embodiment is a fleaperitrophin protein encoded by at least a portion of nCfPL1₁₀₉₆,nCfPL1₈₁₆, nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉, nCfPL2₁₄₆₅, nCfPL2₁₃₅₉,nCfPL3₃₈₇, nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉, nCfPL4₁₀₄₈, nCfPL4₈₅₅,nCfPL4₈₀₂, nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁, and/or nCfPL5₁₁₆₁, or byan allelic variant of any of these nucleic acid molecules. Preferredflea peritrophin proteins of the present invention are encoded bynucleic acid molecules comprising apparently full-length fleaperitrophin coding region, i.e., nucleic acid molecules encoding anapparently full-length flea peritrophin protein.

Preferred flea peritrophin proteins of the present invention can be usedto develop inhibitors that, when administered to an animal in aneffective manner, are capable of protecting that animal from fleainfestation. In accordance with the present invention, the ability of aninhibitor of the present invention to protect an animal from fleainfestation refers to the ability of that protein to, for example,treat, ameliorate and/or prevent infestation caused by fleas. Inparticular, the phrase “to protect an animal from flea infestation”refers to reducing the potential for flea population expansion on andaround the animal (i.e., reducing the flea burden). Preferably, the fleapopulation size is decreased, optimally to an extent that the animal isno longer bothered by fleas. A host animal, as used herein, is an animalfrom which fleas can feed by attaching to and feeding through the skinof the animal. Fleas, and other ectoparasites, can live on a host animalfor an extended period of time or can attach temporarily to an animal inorder to feed. At any given time, a certain percentage of a fleapopulation can be on a host animal whereas the remainder can be in theenvironment of the animal. Such an environment can include not onlyadult fleas, but also flea eggs and/or flea larvae. The environment canbe of any size such that fleas in the environment are able to jump ontoand off of a host animal. For example, the environment of an animal caninclude plants, such as crops, from which fleas infest an animal. Assuch, it is desirable not only to reduce the flea burden on an animalper se, but also to reduce the flea burden in the environment of theanimal.

Suitable fleas to target include any flea that is essentially incapableof causing disease in an animal administered an inhibitor of the presentinvention. As such, fleas to target include any flea that produces aprotein that can be targeted by an inhibitory compound that inhibits aflea flea peritrophin protein function, thereby resulting in thedecreased ability of the parasite to cause disease in an animal.Preferred fleas to target include fleas of the following genera:Ctenocephalides, Cyopsyllus, Diamanus (Oropsylla), Echidnophaga,Nosopsyllus, Pulex, Tunga, and Xenopsylla, with those of the speciesCtenocephalides canis, Ctenocephalides felis, Diamanus montanus,Echidnophaga gallinacea, Nosopsyllus faciatus, Pulex irritans, Pulexsimulans, Tunga penetrans and Xenopsylla cheopis being more preferred,with C. felis being even more preferred. Such fleas are also preferredfor the isolation of proteins or nucleic acid molecules of the presentinvention.

One embodiment of a flea peritrophin protein of the present invention isa fusion protein that includes a flea peritrophin protein-containingdomain attached to one or more fusion segments. Suitable fusion segmentsfor use with the present invention include, but are not limited to,segments that can: enhance a protein's stability; act as animmunopotentiator; and/or assist in purification of a flea peritrophinprotein (e.g., by affinity chromatography). A suitable fusion segmentcan be a domain of any size that has the desired function (e.g., impartsincreased stability, imparts increased immunogenicity to a protein,and/or simplifies purification of a protein). Fusion segments can bejoined to amino and/or carboxyl termini of the fleaperitrophin-containing domain of the protein and can be susceptible tocleavage in order to enable straight-forward recovery of a fleaperitrophin protein. Fusion proteins are preferably produced byculturing a recombinant cell transformed with a fusion nucleic acidmolecule that encodes a protein including the fusion segment attached toeither the carboxyl and/or amino terminal end of a fleaperitrophin-containing domain. Preferred fusion segments include a metalbinding domain (e.g., a poly-histidine segment); an immunoglobulinbinding domain (e.g., Protein A; Protein G; T cell; B cell; Fc receptoror complement protein antibody-binding domains); a sugar binding domain(e.g., a maltose binding domain); and/or a “tag” domain (e.g., at leasta portion of β-galactosidase, a strep tag peptide, a T7 tag peptide, aFlag™ peptide, or other domains that can be purified using compoundsthat bind to the domain, such as monoclonal antibodies). More preferredfusion segments include metal binding domains, such as a poly-histidinesegment; a maltose binding domain; a strep tag peptide, such as thatavailable from Biometra in Tampa, Fla.; and an S10 peptide.

The present invention also includes mimetopes of flea peritrophinproteins of the present invention. As used herein, a mimetope of a fleaperitrophin protein of the present invention refers to any compound thatis able to mimic the activity of such a flea peritrophin protein, oftenbecause the mimetope has a structure that mimics the particular fleaperitrophin protein. Mimetopes can be, but are not limited to: peptidesthat have been modified to decrease their susceptibility to degradationsuch as all-D retro peptides; anti-idiotypic and/or catalyticantibodies, or fragments thereof; non-proteinaceous immunogenic portionsof an isolated protein (e.g., carbohydrate structures); and synthetic ornatural organic molecules, including nucleic acids. Such mimetopes canbe designed using computer-generated structures of proteins of thepresent invention. Mimetopes can also be obtained by generating randomsamples of molecules, such as oligonucleotides, peptides or otherorganic molecules, and screening such samples by affinity chromatographytechniques using the corresponding binding partner.

Another embodiment of the present invention is an isolated nucleic acidmolecule comprising a flea peritrophin nucleic acid molecule, i.e. anucleic acid molecule that can be isolated from a flea cDNA library. Asused herein, flea peritrophin nucleic acid molecules has the samemeaning as flea peritrophin nucleic acid molecule. The identifyingcharacteristics of such nucleic acid molecules are heretofore described.A nucleic acid molecule of the present invention can include an isolatednatural flea peritrophin gene or a homologue thereof, the latter ofwhich is described in more detail below. A nucleic acid molecule of thepresent invention can include one or more regulatory regions,full-length or partial coding regions, or combinations thereof. Theminimal size of a nucleic acid molecule of the present invention is asize sufficient to allow the formation of a stable hybrid (i.e.,hybridization under stringent hybridization conditions) with thecomplementary sequence of another nucleic acid molecule. As such, theminimal size of a flea peritrophin nucleic acid molecule of the presentinvention is from 12 to 18 nucleotides in length.

In accordance with the present invention, an isolated nucleic acidmolecule is a nucleic acid molecule that has been removed from itsnatural milieu (i.e., that has been subjected to human manipulation) andcan include DNA, RNA, or derivatives of either DNA or RNA. As such,“isolated” does not reflect the extent to which the nucleic acidmolecule has been purified. Isolated flea peritrophin nucleic acidmolecules of the present invention, or homologues thereof, can beisolated from a natural source or produced using recombinant DNAtechnology (e.g., polymerase chain reaction (PCR) amplification orcloning) or chemical synthesis. Isolated flea peritrophin nucleic acidmolecules, and homologues thereof, can include, for example, naturalallelic variants and nucleic acid molecules modified by nucleotideinsertions, deletions, substitutions, and/or inversions in a manner suchthat the modifications do not substantially interfere with the nucleicacid molecule's ability to encode a flea peritrophin protein of thepresent invention.

A flea peritrophin nucleic acid molecule homologue can be produced usinga number of methods known to those skilled in the art, see, for example,Sambrook et al., ibid., which is incorporated by reference herein in itsentirety. For example, nucleic acid molecules can be modified using avariety of techniques including, but not limited to, classic mutagenesisand recombinant DNA techniques such as site-directed mutagenesis,chemical treatment, restriction enzyme cleavage, ligation of nucleicacid fragments, PCR amplification, synthesis of oligonucleotide mixturesand ligation of mixture groups to “build” a mixture of nucleic acidmolecules, and combinations thereof. Nucleic acid molecule homologuescan be selected by hybridization with flea peritrophin nucleic acidmolecules or by screening the function of a protein encoded by thenucleic acid molecule (e.g., ability to elicit an immune responseagainst at least one epitope of a flea peritrophin protein, toselectively bind to an antibody that binds a flea peritrophin protein orto effect flea peritrophin activity).

An isolated flea peritrophin nucleic acid molecule of the presentinvention can include a nucleic acid sequence that encodes at least oneflea peritrophin protein of the present invention respectively, examplesof such proteins being disclosed herein. Although the phrase “nucleicacid molecule” primarily refers to the physical nucleic acid moleculeand the phrase “nucleic acid sequence” primarily refers to the sequenceof nucleotides on the nucleic acid molecule, the two phrases can be usedinterchangeably, especially with respect to a nucleic acid molecule, ora nucleic acid sequence, being capable of encoding a flea peritrophinprotein.

A preferred nucleic acid molecule of the present invention, whenadministered to an animal, is capable of protecting that animal fromflea infestation. As will be disclosed in more detail below, a nucleicacid molecule of the present invention can be, or encode, an antisenseRNA, a molecule capable of triple helix formation, a ribozyme, or othernucleic acid-based drug compound. In additional embodiments, a nucleicacid molecule of the present invention can encode a protective protein(e.g., a flea peritrophin protein of the present invention), the nucleicacid molecule being delivered to the animal, for example, by directinjection (i.e, as a genetic vaccine) or in a vehicle such as arecombinant virus vaccine or a recombinant cell vaccine.

In one embodiment of the present invention, a preferred flea peritrophinnucleic acid molecule includes an isolated nucleic acid molecule thathybridizes under conditions that preferably allow less than or equal to30% base pair mismatch, preferably under conditions that allow less thanor equal to 20% base pair mismatch, preferably under conditions thatallow less than or equal to 10% base pair mismatch preferably underconditions that allow less than or equal to 5% base pair mismatch orpreferably under conditions that allow less than or equal to 2% basepair mismatch with a nucleic acid molecule selected from the groupconsisting of SEQ ID NO: 1, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ IDNO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ IDNO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ IDNO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ IDNO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ IDNO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ IDNO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ IDNO:47, and/or SEQ ID NO:49.

Another embodiment of the present invention includes a flea peritrophinnucleic acid molecule, wherein said nucleic acid molecule hybridizesunder conditions comprising, (a) hybridizing in solution comprising1×SSC in the absence of nucleic acid helix destabilizing compounds, at atemperature of 37° C. and (b) washing in a solution comprising 1×SSC inthe absence of nucleic acid helix destabilizing compounds, at atemperature of 47° C., to an isolated nucleic acid molecule selectedfrom the group consisting of SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ IDNO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ IDNO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ IDNO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ IDNO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ IDNO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ IDNO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ IDNO:46, SEQ ID NO:47, and/or SEQ ID NO:49. Additional preferred nucleicacid molecules of the present invention include oligonucleotides of anisolated nucleic acid molecule, wherein said nucleic acid moleculehybridizes under conditions comprising, (a) hybridizing in solutioncomprising 1×SSC in the absence of nucleic acid helix destabilizingcompounds, at a temperature of 37° C. and (b) washing in a solutioncomprising 1×SSC in the absence of nucleic acid helix destabilizingcompounds, at a temperature of 47° C., to an isolated nucleic acidmolecule selected from the group consisting of SEQ ID NO:1, SEQ ID NO:3,SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ IDNO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ IDNO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ IDNO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ IDNO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ IDNO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ IDNO:45, SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49, wherein saidoligonucleotide comprises at least 25 nucleotides.

Additional preferred flea peritrophin nucleic acid molecules of thepresent invention include nucleic acid molecules comprising a nucleicacid sequence that is preferably at least 70%, preferably at least 80%,preferably at least 90%, preferably at least 92%, preferably at least95%, or preferably at least 98% identical to a nucleic acid sequenceselected from the group consisting of SEQ ID NO:1, SEQ ID NO:3, SEQ IDNO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9,SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15,SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21,SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27,SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33,SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38,SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45,SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49. Also preferred areoligonucleotides of any of such nucleic acid molecules. Percent identityas used herein is determined using the Needleman-Wunsch algorithm,available in the SeqLab software using default parameters.

One embodiment of the present invention is a nucleic acid moleculecomprising all or part of nucleic acid molecules nCfPL1₁₀₉₆, nCfPL1₈₁₆,nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉, nCfPL2₁₄₆₅, nCfPL2₁₃₅₉, nCfPL3₃₈₇,nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉, nCfPL4₁₀₄₈, nCfPL4₈₅₅, nCfPL4₈₀₂,nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁, and/or nCfPL5₁₁₆₁, or allelicvariants of these nucleic acid molecules. Another preferred nucleic acidmolecule of the present invention includes at least a portion of nucleicacid sequence SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ IDNO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11,SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:18,SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23,SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29,SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35,SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41,SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47,and/or SEQ ID NO:49, as well as allelic variants of nucleic acidmolecules having these nucleic acid sequences and homologues of nucleicacid molecules having these nucleic acid sequences; preferably such ahomologue encodes or is complementary to a nucleic acid molecule thatencodes at least one epitope that elicits an immune response against aprotein having an amino acid sequence SEQ ID NO:2, SEQ ID NO:12, SEQ IDNO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43, and/orSEQ ID NO:48. Such nucleic acid molecules can include nucleotides inaddition to those included in the SEQ ID NOs, such as, but not limitedto, a full-length gene, a full-length coding region, a nucleic acidmolecule encoding a fusion protein, or a nucleic acid molecule encodinga multivalent protective compound.

In one embodiment, a flea peritrophin nucleic acid molecule of thepresent invention encodes a protein having an amino acid sequence thatis at least 70%, preferably at least 80%, preferably at least 90%,preferably at least 95%, preferably at least 98%, preferably at least99%, or preferably at least 100% identical to SEQ ID NO:2, SEQ ID NO:12,SEQ ID NO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40, SEQ ID NO:43,and/or SEQ ID NO:48. The present invention also includes a fleaperitrophin nucleic acid molecule encoding a protein having at least aportion of SEQ ID NO:2, SEQ ID NO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ IDNO:31, SEQ ID NO:40, SEQ ID NO:43, and/or SEQ ID NO:48, as well asallelic variants of a nucleic acid molecule encoding a protein havingthese sequences, including nucleic acid molecules that have beenmodified to accommodate codon usage properties of the cells in whichsuch nucleic acid molecules are to be expressed.

In another embodiment, a preferred flea peritrophin nucleic acidmolecule of the present invention comprises a nucleic acid moleculecomprising at least 20 nucleotides, preferably at least 25 nucleotides,preferably at least 30 nucleotides, preferably at least 40 nucleotides,preferably at least 50 nucleotides, preferably at least 75 nucleotides,preferably at least 100 nucleotides, preferably at least 125nucleotides, preferably at least 150 nucleotides, preferably at least175 nucleotides, preferably at least 200 nucleotides, preferably atleast 250 nucleotides, preferably at least 350 nucleotides, preferablyat least 450 nucleotides, preferably at least 550 nucleotides,preferably at least 650 nucleotides, preferably at least 750nucleotides, preferably at least 1000 nucleotides, preferably at least1100 nucleotides, preferably at least 1200 nucleotides, preferably atleast 1500 nucleotides, preferably at least 1750 nucleotides, orpreferably at least 1850 nucleotides in length.

In another embodiment, a preferred flea peritrophin nucleic acidmolecule encodes a protein comprising at least 6 amino acids, preferablyat least 10 amino acids, preferably at least 20 amino acids, preferablyat least 30 amino acids, preferably at least 40 amino acids, preferablyat least 50 amino acids, preferably at least 75 amino acids, preferablyat least 100 amino acids, preferably at least 200 amino acids,preferably at least 300 amino acids, preferably at least 400 aminoacids, or preferably at least 450 amino acids.

In another embodiment, a preferred flea peritrophin nucleic acidmolecule of the present invention comprises an apparently full-lengthflea peritrophin coding region, i.e., the preferred nucleic acidmolecule encodes an apparently full-length flea peritrophin protein,respectively, or a post-translationally modified protein thereof. In oneembodiment, a preferred flea peritrophin nucleic acid molecule of thepresent invention encodes a mature protein.

In another embodiment, a preferred flea peritrophin nucleic acidmolecule of the present invention comprises a nucleic acid moleculecomprising SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ IDNO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11,SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:18,SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23,SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29,SEQ ID NO:30, SEQ ID NO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35,SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41,SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47,and/or SEQ ID NO:49, or a fragment thereof.

A fragment of a flea peritrophin nucleic acid molecule of the presentinvention preferably comprises at least 15 nucleotides, preferably atleast 18 nucleotides, preferably at least 21 nucleotides, preferably atleast 25 nucleotides, preferably at least 30 nucleotides, preferably atleast 35 nucleotides, preferably at least 40 nucleotides, preferably atleast 50 nucleotides, preferably at least 75 nucleotides, preferably atleast 100 nucleotides, preferably at least 125 nucleotides, preferablyat least 150 nucleotides, preferably at least 175 nucleotides,preferably at least 200 nucleotides, preferably at least 250nucleotides, preferably at least 350 nucleotides, preferably at least450 nucleotides, preferably at least 550 nucleotides, preferably atleast 650 nucleotides, preferably at least 750 nucleotides, preferablyat least 1000 nucleotides, preferably at least 1100 nucleotides,preferably at least 1200 nucleotides, preferably at least 1500nucleotides, preferably at least 1750 nucleotides, or preferably atleast 1850 nucleotides identical in sequence to a correspondingcontiguous sequence selected from the group consisting of SEQ ID NO:1,SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ IDNO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ IDNO:14, SEQ ID NO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ IDNO:20, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ IDNO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, SEQ IDNO:32, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ ID NO:36, SEQ IDNO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41, SEQ ID NO:42, SEQ IDNO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47, and/or SEQ ID NO:49.

The phrase, a nucleic acid molecule comprising at least “x” contiguous,or consecutive nucleotides identical in sequence to at least “x”contiguous, or consecutive nucleotides of a nucleic acid moleculeselected from the group consisting of SEQ ID NO:“y”, refers to an“x”-nucleotide in length nucleic acid molecule that is identical insequence to an “x”-nucleotide portion of SEQ ID NO:“y”, as well as tonucleic acid molecules that are longer in length than “x”. Theadditional length may be in the form of nucleotides that extend fromeither the 5′ or the 3′ end(s) of the contiguous identical“x”-nucleotide portion. The 5′ and/or 3′ extensions can include one ormore extensions that have no identity to a molecule of the presentinvention, as well as extensions that show similarity or identity tocited nucleic acids sequences or portions thereof.

Knowing the nucleic acid sequences of certain flea peritrophin nucleicacid molecules of the present invention allows one skilled in the artto, for example, (a) make copies of those nucleic acid molecules, (b)obtain nucleic acid molecules including at least a portion of suchnucleic acid molecules (e.g., nucleic acid molecules includingfull-length genes, full-length coding regions, regulatory controlsequences, truncated coding regions), and (c) obtain other fleaperitrophin nucleic acid molecules. Such nucleic acid molecules can beobtained in a variety of ways including screening appropriate expressionlibraries with antibodies of the present invention; traditional cloningtechniques using oligonucleotide probes of the present invention toscreen appropriate libraries; and PCR amplification of appropriatelibraries or DNA using oligonucleotide primers of the present invention.Preferred libraries to screen or from which to amplify nucleic acidmolecules include cDNA libraries as well as genomic DNA libraries.Similarly, preferred DNA sources to screen or from which to amplifynucleic acid molecules include cDNA and genomic DNA. Techniques to cloneand amplify genes are disclosed, for example, in Sambrook et al., ibid.

The present invention also includes nucleic acid molecules that areoligonucleotides capable of hybridizing, under stringent hybridizationconditions, with complementary regions of other, preferably longer,nucleic acid molecules of the present invention such as those comprisingC. felis peritrophin nucleic acid molecules or other flea peritrophinnucleic acid molecules. Oligonucleotides of the present invention can beRNA, DNA, or derivatives of either. The minimum size of sucholigonucleotides is the size required for formation of a stable hybridbetween an oligonucleotide and a complementary sequence on a nucleicacid molecule of the present invention. A preferred oligonucleotide ofthe present invention has a maximum size of preferably 100 to 200nucleotides. The present invention includes oligonucleotides that can beused as, for example, probes to identify nucleic acid molecules, primersto produce nucleic acid molecules, or therapeutic reagents to inhibitflea peritrophin protein production or activity (e.g., as antisense-,triplex formation-, ribozyme- and/or RNA drug-based reagents). Thepresent invention also includes the use of such oligonucleotides toprotect animals from disease using one or more of such technologies.Appropriate oligonucleotide-containing therapeutic compositions can beadministered to an animal using techniques known to those skilled in theart.

One embodiment of the present invention includes a recombinant vector,which includes at least one isolated nucleic acid molecule of thepresent invention, inserted into any vector capable of delivering thenucleic acid molecule into a host cell. Such a vector containsheterologous nucleic acid sequences, that is nucleic acid sequences thatare not naturally found adjacent to nucleic acid molecules of thepresent invention and that preferably are derived from a species otherthan the species from which the nucleic acid molecule(s) are derived.The vector can be either RNA or DNA, either prokaryotic or eukaryotic,and typically is a virus or a plasmid. Recombinant vectors can be usedin the cloning, sequencing, and/or otherwise manipulating of fleaperitrophin nucleic acid molecules of the present invention.

One type of recombinant vector, referred to herein as a recombinantmolecule, comprises a nucleic acid molecule of the present inventionoperatively linked to an expression vector. The phrase operativelylinked refers to insertion of a nucleic acid molecule into an expressionvector in a manner such that the molecule is able to be expressed whentransformed into a host cell. As used herein, an expression vector is aDNA or RNA vector that is capable of transforming a host cell and ofeffecting expression of a specified nucleic acid molecule. Preferably,the expression vector is also capable of replicating within the hostcell. Expression vectors can be either prokaryotic or eukaryotic, andare typically viruses or plasmids. Expression vectors of the presentinvention include any vectors that function (i.e., direct geneexpression) in recombinant cells of the present invention, including inbacterial, fungal, parasite, insect, other animal, and plant cells.Preferred expression vectors of the present invention can direct geneexpression in bacterial, yeast, insect and mammalian cells, and morepreferably in the cell types disclosed herein.

In particular, expression vectors of the present invention containregulatory sequences such as transcription control sequences,translation control sequences, origins of replication, and otherregulatory sequences that are compatible with the recombinant cell andthat control the expression of nucleic acid molecules of the presentinvention. In particular, recombinant molecules of the present inventioninclude transcription control sequences. Transcription control sequencesare sequences that control the initiation, elongation, and terminationof transcription. Particularly important transcription control sequencesare those which control transcription initiation, such as promoter,enhancer, operator and repressor sequences. Suitable transcriptioncontrol sequences include any transcription control sequence that canfunction in at least one of the recombinant cells of the presentinvention. A variety of such transcription control sequences are knownto those skilled in the art. Preferred transcription control sequencesinclude those that function in bacterial, yeast, or insect and mammaliancells, such as, but not limited to, tac, lac, trp, trc, oxy-pro,omp/lpp, rmB, bacteriophage lambda (such as lambda p_(L) and lambdap_(R) and fusions that include such promoters), bacteriophage T7, T7lac,bacteriophage T3, bacteriophage SP6, bacteriophage SP01,metallothionein, alpha-mating factor, Pichia alcohol oxidase, alphavirussubgenomic promoter, antibiotic resistance gene, baculovirus, Heliothiszea insect virus, vaccinia virus, herpesvirus, raccoon poxvirus, otherpoxvirus, adenovirus, cytomegalovirus (such as immediate earlypromoter), simian virus 40, retrovirus, actin, retroviral long terminalrepeat, Rous sarcoma virus, heat shock, phosphate and nitratetranscription control sequences as well as other sequences capable ofcontrolling gene expression in prokaryotic or eukaryotic cells.Additional suitable transcription control sequences includetissue-specific promoters and enhancers as well as lymphokine-induciblepromoters (e.g., promoters inducible by interferons or interleukins).Transcription control sequences of the present invention can alsoinclude naturally occurring transcription control sequences naturallyassociated with fleas, such as C. felis transcription control sequences.

Suitable and preferred nucleic acid molecules to include in recombinantvectors of the present invention are as disclosed herein. Preferrednucleic acid molecules to include in recombinant vectors, andparticularly in recombinant molecules, include nCfPL1₁₀₉₆, nCfPL1₈₁₆,nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉, nCfPL2₁₄₆₅, nCfPL2₁₃₅₉, nCfPL3₁₀₉₆,nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉, nCfPL4₁₀₄₈, nCfPL4₈₅₅, nCfPL4₈₀₂,nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁, and/or nCfPL5₁₁₆₁.

Recombinant molecules of the present invention may also (a) containsecretory signals (i.e., signal segment nucleic acid sequences) toenable an expressed flea peritrophin protein of the present invention tobe secreted from the cell that produces the protein and/or (b) containfusion sequences which lead to the expression of nucleic acid moleculesof the present invention as fusion proteins. Examples of suitable signalsegments include any signal segment capable of directing the secretionof a protein of the present invention. Preferred signal segmentsinclude, but are not limited to, tissue plasminogen activator (t-PA),interferon, interleukin, growth hormone, histocompatibility and viralenvelope glycoprotein signal segments. Suitable fusion segments encodedby fusion segment nucleic acids are disclosed herein. In addition, anucleic acid molecule of the present invention can be joined to a fusionsegment that directs the encoded protein to the proteosome, such as aubiquitin fusion segment. Eukaryotic recombinant molecules may alsoinclude intervening and/or untranslated sequences surrounding and/orwithin the nucleic acid sequences of nucleic acid molecules of thepresent invention.

Another embodiment of the present invention includes a recombinant cellcomprising a host cell transformed with one or more recombinantmolecules of the present invention. Transformation of a nucleic acidmolecule into a cell can be accomplished by any method by which anucleic acid molecule can be inserted into the cell. Transformationtechniques include, but are not limited to, transfection,electroporation, microinjection, lipofection, adsorption, and protoplastfusion. A recombinant cell may remain unicellular or may grow into atissue, organ or a multicellular organism. It is to be noted that a cellline refers to any recombinant cell of the present invention that is nota transgenic animal. Transformed nucleic acid molecules of the presentinvention can remain extrachromosomal or can integrate into one or moresites within a chromosome of the transformed (i.e., recombinant) cell insuch a manner that their ability to be expressed is retained. Preferrednucleic acid molecules with which to transform a cell include fleaperitrophin nucleic acid molecules disclosed herein. Preferred nucleicacid molecules with which to transform a cell include nCfPL1₁₀₉₆,nCfPL3₈₁₆, nCfPL2₄₄₅, nCfPL2₁₂₇₉, nCfPL2₂₇₉, nCfPL2₁₄₆₅, nCfPL2₁₃₅₉,nCfPL3₃₈₇, nCfPL3₂₄₃, nCfPL4₉₆₀, nCfPL4₁₀₂₉, nCfPL4₁₀₄₈, nCfPL4₈₅₅,nCfPL4₈₀₂, nCfPL5₁₅₁₃, nCfPL5₁₈₃₂, nCfPL5₁₁₉₁, and/or nCfPL5₁₁₆₁.

Suitable host cells to transform include any cell that can betransformed with a nucleic acid molecule of the present invention. Hostcells can be either untransformed cells or cells that are alreadytransformed with at least one nucleic acid molecule (e.g., nucleic acidmolecules encoding one or more proteins of the present invention and/orother proteins useful in the production of multivalent vaccines). Hostcells of the present invention either can be endogenously (i.e.,naturally) capable of producing flea peritrophin proteins of the presentinvention or can be capable of producing such proteins after beingtransformed with at least one nucleic acid molecule of the presentinvention. Host cells of the present invention can be any cell capableof producing at least one protein of the present invention, and includebacterial, fungal (including yeast), parasite (including helminth,protozoa and ectoparasite), other insect, other animal and plant cells.Preferred host cells include bacterial, mycobacterial, yeast, insect andmammalian cells. More preferred host cells include Salmonella,Escherichia, Bacillus, Caulobacter, Listeria, Saccharomyces, Pichia,Spodoptera, Mycobacteria, Trichoplusia, BHK (baby hamster kidney) cells,MDCK cells (Madin-Darby canine kidney cell line), CRFK cells (Crandellfeline kidney cell line), CV-1 cells (African monkey kidney cell lineused, for example, to culture raccoon poxvirus), COS (e.g., COS-7)cells, and Vero cells. Particularly preferred host cells are Escherichiacoli, including E. coli K-12 derivatives; Salmonella typhi; Salmonellatyphimurium, including attenuated strains such as UK-1_(χ)3987 andSR-11_(χ)4072; Caulobacter; Pichia; Spodoptera frugiperda; Trichoplusiani; BHK cells; MDCK cells; CRFK cells; CV-1 cells; COS cells; Verocells; and non-tumorigenic mouse myoblast G8 cells (e.g., ATCC CRL1246). Additional appropriate mammalian cell hosts include other kidneycell lines, other fibroblast cell lines (e.g., human, murine or chickenembryo fibroblast cell lines), myeloma cell lines, Chinese hamster ovarycells, mouse NIH/3T3 cells, LMTK³¹ cells and/or HeLa cells. In oneembodiment, the proteins may be expressed as heterologous proteins inmyeloma cell lines employing immunoglobulin promoters.

A recombinant cell is preferably produced by transforming a host cellwith one or more recombinant molecules, each comprising one or morenucleic acid molecules of the present invention operatively linked to anexpression vector containing one or mbre transcription controlsequences, examples of which are disclosed herein. The phraseoperatively linked refers to insertion of a nucleic acid molecule intoan expression vector in a manner such that the molecule is able to beexpressed when transformed into a host cell.

A recombinant cell of the present invention includes any celltransformed with at least one of any nucleic acid molecule of thepresent invention. Suitable and preferred nucleic acid molecules as wellas suitable and preferred recombinant molecules with which to transfercells are disclosed herein.

Recombinant cells of the present invention can also be co-transformedwith one or more recombinant molecules including flea peritrophinnucleic acid molecules encoding one or more proteins of the presentinvention and one or more other nucleic acid molecules encoding otherprotective compounds, as disclosed herein (e.g., to produce multivalentvaccines).

Recombinant DNA technologies can be used to improve expression oftransformed nucleic acid molecules by manipulating, for example, thenumber of copies of the nucleic acid molecules within a host cell, theefficiency with which those nucleic acid molecules are transcribed, theefficiency with which the resultant transcripts are translated, and theefficiency of post-translational modifications. Recombinant techniquesuseful for increasing the expression of nucleic acid molecules of thepresent invention include, but are not limited to, operatively linkingnucleic acid molecules to high-copy number plasmids, integration of thenucleic acid molecules into one or more host cell chromosomes, additionof vector stability sequences to plasmids, substitutions ormodifications of transcription control signals (e.g., promoters,operators, enhancers), substitutions or modifications of translationalcontrol signals (e.g., ribosome binding sites, Shine-Dalgarnosequences), modification of nucleic acid molecules of the presentinvention to correspond to the codon usage of the host cell, deletion ofsequences that destabilize transcripts, and use of control signals thattemporally separate recombinant cell growth from recombinant enzymeproduction during fermentation. The activity of an expressed recombinantprotein of the present invention may be improved by fragmenting,modifying, or derivatizing nucleic acid molecules encoding such aprotein.

Isolated flea peritrophin proteins of the present invention can beproduced in a variety of ways, including production and recovery ofnatural proteins, production and recovery of recombinant proteins, andchemical synthesis of the proteins. In one embodiment, an isolatedprotein of the present invention is produced by culturing a cell capableof expressing the protein under conditions effective to produce theprotein, and recovering the protein. A preferred cell to culture is arecombinant cell of the present invention. Effective culture conditionsinclude, but are not limited to, effective media, bioreactor,temperature, pH and oxygen conditions that permit protein production. Aneffective, medium refers to any medium in which a cell is cultured toproduce a flea peritrophin protein of the present invention. Such mediumtypically comprises an aqueous medium having assimilable carbon,nitrogen and phosphate sources, and appropriate salts, minerals, metalsand other nutrients, such as vitamins. Cells of the present inventioncan be cultured in conventional fermentation bioreactors, shake flasks,test tubes, microtiter dishes, and petri plates. Culturing can becarried out at a temperature, pH and oxygen content appropriate for arecombinant cell. Such culturing conditions are within the expertise ofone of ordinary skill in the art.

Depending on the vector and host system used for production, resultantproteins of the present invention may either remain within therecombinant cell; be secreted into the fermentation medium; be secretedinto a space between two cellular membranes, such as the periplasmicspace in E. coli; or be retained on the outer surface of a cell or viralmembrane.

The phrase “recovering the protein”, as well as similar phrases, refersto collecting the whole fermentation medium containing the protein andneed not imply additional steps of separation or purification. Proteinsof the present invention can be purified using a variety of standardprotein purification techniques, such as, but not limited to, affinitychromatography, ion exchange chromatography, filtration,electrophoresis, hydrophobic interaction chromatography, gel filtrationchromatography, reverse phase chromatography, concanavalin Achromatography, chromatofocusing and differential solubilization.Proteins of the present invention are preferably retrieved in“substantially pure” form. As used herein, “substantially pure” refersto a purity that allows for the effective use of the protein as atherapeutic composition or diagnostic. A therapeutic composition foranimals, for example, should exhibit no substantial toxicity andpreferably should be capable of stimulating the production of antibodiesin a treated animal.

The present invention also includes isolated (i.e., removed from theirnatural milieu) antibodies that selectively bind to a flea peritrophinprotein of the present invention or a mimetope thereof (e.g., anti-fleaperitrophin antibodies). As used herein, the term “selectively binds to”a protein refers to the ability of antibodies of the present inventionto preferentially bind to specified proteins and mimetopes thereof ofthe present invention. Binding can be measured using a variety ofmethods standard in the art including enzyme immunoassays (e.g., ELISA),immunoblot assays, etc.; see, for example, Sambrook et al., ibid., andHarlow, et al., 1988, Antibodies, a Laboratory Manual, Cold SpringHarbor Labs Press; Harlow et al., ibid., is incorporated by referenceherein in its entirety. An anti-flea peritrophin antibody of the presentinvention preferably selectively binds to a flea peritrophin protein,respectively, in such a way as to inhibit the function of that protein.

Isolated antibodies of the present invention can include antibodies inserum, or antibodies that have been purified to varying degrees.Antibodies of the present invention can be polyclonal or monoclonal, orcan be functional equivalents such as antibody fragments andgenetically-engineered antibodies, including single chain antibodies orchimeric antibodies that can bind to one or more epitopes.

A preferred method to produce antibodies of the present inventionincludes (a) administering to an animal an effective amount of aprotein, peptide or mimetope thereof of the present invention to producethe antibodies and (b) recovering the antibodies. In another method,antibodies of the present invention are produced recombinantly usingtechniques as heretofore disclosed to produce flea peritrophin proteinsof the present invention. Antibodies raised against defined proteins ormimetopes can be advantageous because such antibodies are notsubstantially contaminated with antibodies against other substances thatmight otherwise cause interference in a diagnostic assay or side effectsif used in a therapeutic composition.

Antibodies of the present invention have a variety of potential usesthat are within the scope of the present invention. For example, suchantibodies can be used (a) as therapeutic compounds to passivelyimmunize an animal in order to protect the animal from fleas susceptibleto treatment by such antibodies and/or (b) as tools to screen expressionlibraries and/or to recover desired proteins of the present inventionfrom a mixture of proteins and other contaminants. Furthermore,antibodies of the present invention can be used to target cytotoxicagents to fleas in order to directly kill such fleas. Targeting can beaccomplished by conjugating (i.e., stably joining) such antibodies tothe cytotoxic agents using techniques known to those skilled in the art.Suitable cytotoxic agents are known to those skilled in the art.

One embodiment of the present invention is a therapeutic compositionthat, when administered to an animal susceptible to flea infestation, iscapable of protecting that animal from flea infestation. Therapeuticcompositions of the present invention include at least one of thefollowing protective molecules: an isolated flea peritrophin protein; amimetope of an isolated flea peritrophin protein; an isolated fleaperitrophin nucleic acid molecule; and/or a compound derived from saidisolated flea peritrophin protein that inhibits flea peritrophin proteinactivity. A therapeutic composition of the present invention can furthercomprise a component selected from the group of an excipient, a carrier,and/or an adjuvant; these components are described further herein. Asused herein, a protective molecule or protective compound refers to acompound that, when administered to an animal in an effective manner, isable to treat, ameliorate, and/or prevent flea infestation. Preferredfleas to target are heretofore disclosed. One example of a protectivemolecule is a vaccine, such as, but not limited to, a naked nucleic acidvaccine, a recombinant virus vaccine, a recombinant cell vaccine, and arecombinant protein vaccine. Another example of a protective molecule isa compound that inhibits flea peritrophin protein activity, such as anisolated antibody that selectively binds to a flea peritrophin protein,a substrate analog of a flea peritrophin protein, anti-sense-, triplexformation-, ribozyme-, and/or RNA drug-based compounds, or otherinorganic or organic molecules that inhibit flea peritrophin proteinactivity. Inhibiting flea peritrophin protein activity can refer to theability of a compound to reduce the activity of flea peritrophinproteins. Inhibiting flea peritrophin protein activity can also refer tothe ability of a compound to reduce the amount of flea peritrophinprotein in a flea.

One embodiment of the present invention is a therapeutic compositioncomprising an excipient and a compound selected from the groupconsisting of: (a) an isolated nucleic acid molecule selected from thegroup consisting of a flea cDNA molecule and a flea RNA molecule,wherein said nucleic acid molecule is selected from the group consistingof (a) a nucleic acid molecule at least 25 nucleotides in length thathybridizes with a nucleic acid molecule having a nucleic acid sequenceselected from the group consisting of SEQ ID NO:1, SEQ ID NO:3, SEQ IDNO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9,SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQ ID NO:15,SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ ID NO:21,SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ ID NO:27,SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, and SEQ ID NO:32, and (b) anucleic acid molecule at least 35 nucleotides in length that hybridizeswith a nucleic acid molecule having a nucleic acid sequence selectedfrom the group consisting of SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35,SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ ID NO:41,SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ ID NO:47,and SEQ ID NO:49; wherein said hybridization of (a) and (b) is performedunder conditions comprising (1) hybridizing in a solution comprising1×SSC in the absence of nucleic acid helix destabilizing compounds, at atemperature of 37° C. and (2) washing in a solution comprising 1×SSC inthe absence of helix destabilizing compounds, at a temperature of 47°C.; (b) an isolated protein selected from the group consisting of (1) aprotein encoded by a nucleic acid molecule selected from the groupconsisting of (i) a nucleic acid molecule at least 25 nucleotides inlength that hybridizes with a nucleic acid molecule having a nucleicacid sequence selected from the group consisting of SEQ ID NO:1, SEQ IDNO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8,SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14, SEQID NO:15, SEQ ID NO:16, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20, SEQ IDNO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, and SEQ ID NO:32, and(ii) a nucleic acid molecule at least 35 nucleotides in length thathybridizes with a nucleic acid molecule having a nucleic acid sequenceselected from the group consisting of SEQ ID NO:33, SEQ ID NO:34, SEQ IDNO:35, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:38, SEQ ID NO:39, SEQ IDNO:41, SEQ ID NO:42, SEQ ID NO:44, SEQ ID NO:45, SEQ ID NO:46, SEQ IDNO:47, and SEQ ID NO:49; wherein said hybridization of (i) and (ii) isperformed under conditions comprising (a) hybridizing in a solutioncomprising 1×SSC in the absence of nucleic acid helix destabilizingcompounds, at a temperature of 37° C. and (b) washing in a solutioncomprising 1×SSC in the absence of helix destabilizing compounds, at atemperature of 47° C.; and (2) an isolated protein, comprising at least10 amino acids identical in sequence to a 10 amino acid portion of anamino acid sequence selected from the group consisting of SEQ ID NO:2,SEQ ID NO:12, SEQ ID NO:17, SEQ ID NO:26, SEQ ID NO:31, SEQ ID NO:40,SEQ ID NO:43, and SEQ ID NO:48; and (c) an isolated antibody thatselectively binds to a protein as set forth in (b).

Another embodiment of the present invention includes a method to reduceflea infestation in an animal susceptible to flea infestation. Such amethod includes the step of administering to the animal a therapeuticmolecule comprising a protective compound selected from the groupconsisting of (a) an isolated flea peritrophin protein; (b) a mimetopeof an isolated flea peritrophin protein; (c) an isolated fleaperitrophin nucleic acid molecule; and (d) a compound derived from anisolated flea peritrophin protein that inhibits flea peritrophin proteinactivity.

Therapeutic compositions of the present invention can be administered toany animal susceptible to flea infestation, preferably to mammals, andmore preferably to dogs, cats, humans, ferrets, horses, cattle, sheep,and other pets, economic food animals, work animals and/or zoo animals.Preferred animals to protect against flea infestation include dogs,cats, humans, and ferrets, with dogs and cats being particularlypreferred.

As used herein, the term derived, or the term derived from, refers to apeptide, antibody, mimetope, nucleic acid molecule, or other compoundthat was obtained from or using a flea peritrophin protein or nucleicacid molecule of the present invention. Methods to obtain derivativesfrom a flea peritrophin molecule of the present invention are known inthe art, and as such include, but are not limited to molecular modelingof flea peritrophin proteins to determine active sites, and predictingfrom these active sites smaller fragments and/or mimetopes that retainand/or mimic these active sites, thereby inhibiting flea peritrophinprotein activity. Other inhibitors of flea peritrophin activity can alsobe obtained in a variety of ways, including but not limited to screeningof peptide or small chemical compound libraries against flea peritrophinproteins of the present invention; and screening of polyclonal ormonoclonal antibodies to find antibodies that specifically bind fleaperitrophin proteins of the present invention.

A flea peritrophin protein inhibitor of the present invention (i.e. aninhibitor of a flea peritrophin protein) is identified by its ability tomimic, bind to, modify, or otherwise interact with, a flea peritrophinprotein, thereby inhibiting the activity of a natural flea peritrophinprotein. Suitable inhibitors of flea peritrophin protein activity arecompounds that inhibit flea peritrophin protein activity in at least oneof a variety of ways: (a) by binding to or otherwise interacting with orotherwise modifying flea peritrophin protein sites; (b) by binding tothe flea peritrophin protein and thus reducing the availability of theflea peritrophin protein in solution; (c) by mimicking a fleaperitrophin protein; and (d) by interacting with other regions of theflea peritrophin protein to inhibit flea peritrophin protein activity,for example, by allosteric interaction.

Flea peritrophin protein inhibitors can be used directly as compounds incompositions of the present invention to treat animals as long as suchcompounds are not harmful to host animals being treated. Preferred fleaperitrophin protein inhibitors of the present invention include, but arenot limited to, flea peritrophin protein substrate analogs, and othermolecules that bind to a flea peritrophin protein (e.g., to anallosteric site) in such a manner that the activity of the fleaperitrophin protein is inhibited. A flea peritrophin protein substrateanalog refers to a compound that interacts with (e.g., binds to,associates with, modifies) the active site of a flea peritrophinprotein. A preferred flea peritrophin protein substrate analog inhibitsflea peritrophin protein activity. Flea peritrophin protein substrateanalogs can be of any inorganic or organic composition. Flea peritrophinprotein substrate analogs can be, but need not be, structurally similarto a flea peritrophin protein natural substrate as long as they caninteract with the active site of that flea peritrophin protein. Fleaperitrophin protein substrate analogs can be designed usingcomputer-generated structures of flea peritrophin proteins of thepresent invention or computer structures of flea peritrophin protein'snatural substrates. Preferred sites to model include one or more of theactive sites of flea peritrophin proteins. Substrate analogs can also beobtained by generating random samples of molecules, such asoligonucleotides, peptides, peptidomimetic compounds, or other inorganicor organic molecules, and screening such samples for their ability tointerfere with interaction between flea peritrophin proteins and theirsubstrates, e.g. by affinity chromatography techniques. A preferred fleaperitrophin protein substrate analog is a flea peritrophin proteinmimetic compound, i.e., a compound that is structurally and/orfunctionally similar to a natural substrate of a flea peritrophinprotein of the present invention, particularly to the region of thesubstrate that interacts with the flea peritrophin protein active site,but that inhibits flea peritrophin protein activity upon interactingwith the flea peritrophin protein active site.

The present invention also includes a therapeutic composition comprisingat least one protective molecule of the present invention in combinationwith at least one additional compound protective against one or moreinfectious agents.

In one embodiment, a therapeutic composition of the present inventioncan be used to protect an animal from flea infestation by administeringsuch composition to a flea in order to prevent infestation. Suchadministration to the flea and/or animal could be oral, or byapplication to the animal's body surface (e.g. topical spot-on, orspraying onto the animal), or by application to the environment (e.g.,spraying). Examples of such compositions include, but are not limitedto, transgenic vectors capable of producing at least one therapeuticcomposition of the present invention. In another embodiment a flea caningest therapeutic compositions, or products thereof, present on thesurface of or in the blood of a host animal that has been administered atherapeutic composition of the present invention.

In accordance with the present invention, a host animal (i.e., an animalthat is or is capable of being infested with fleas) is treated byadministering to the animal a therapeutic composition of the presentinvention in such a manner that the composition itself (e.g., a fleaperitrophin protein, a flea peritrophin nucleic acid molecule, a fleaperitrophin protein inhibitor, a peritrophin protein synthesissuppressor (i.e., a compound that decreases the production or half-lifeof a peritrophin protein in fleas), a flea peritrophin protein mimetope,or a anti-flea peritrophin antibody) or a product generated by theanimal in response to administration of the composition (e.g.,antibodies produced in response to administration of a flea peritrophinprotein or nucleic acid molecule, or conversion of an inactive inhibitor“prodrug” to an active flea peritrophin protein inhibitor) ultimatelyenters the flea. A host animal is preferably treated in such a way thatthe compound or product thereof is present on the body surface of theanimal or enters the blood stream of the animal. Fleas are then exposedto the composition or product when they feed from the animal. Forexample, flea peritrophin protein inhibitors administered to an animalare administered in such a way that the inhibitors enter the bloodstream of the animal, where they can be taken up by feeding fleas.

The present invention also includes the ability to reduce larval fleainfestation in that when fleas feed from a host animal that has beenadministered a therapeutic composition of the present invention, atleast a portion of compounds of the present invention, or productsthereof, in the blood taken up by the fleas are excreted by the fleas infeces, which is subsequently ingested by flea larvae. In particular, itis of note that flea larvae obtain most, if not all, of their nutritionfrom flea feces.

In accordance with the present invention, reducing flea peritrophinprotein activity in a flea can lead to a number of outcomes that reduceflea burden on treated animals and their surrounding environments. Suchoutcomes include, but are not limited to, (a) reducing the viability offleas that feed from the treated animal, (b) reducing the fecundity offemale fleas that feed from the treated animal, (c) reducing thereproductive capacity of male fleas that feed from the treated animal,(d) reducing the viability of eggs laid by female fleas that feed fromthe treated animal, (e) altering the blood feeding behavior of fleasthat feed from the treated animal (e.g., fleas take up less volume perfeeding or feed less frequently), (i) reducing the viability of flealarvae, for example due to the feeding of larvae from feces of fleasthat feed from the treated animal, (g) altering the development of flealarvae (e.g., by decreasing feeding behavior, inhibiting growth,inhibiting (e.g., slowing or blocking) molting, and/or otherwiseinhibiting maturation to adults), and/or (h) altering or decreasing theability of fleas or flea larvae to digest a blood meal.

In order to protect an animal from flea infestation, a therapeuticcomposition of the present invention is administered to the animal in aneffective manner such that the composition is capable of protecting thatanimal from flea infestation. Therapeutic compositions of the presentinvention can be administered to animals prior to infestation in orderto prevent infestation (i.e., as a preventative vaccine) and/or can beadministered to animals after infestation. For example, proteins,mimetopes thereof, and antibodies thereof can be used asimmunotherapeutic agents.

Therapeutic compositions of the present invention can be formulated inan excipient that the animal to be treated can tolerate. Examples ofsuch excipients include water, saline, Ringer's solution, dextrosesolution, Hank's solution, and other aqueous physiologically balancedsalt solutions. Nonaqueous vehicles, such as fixed oils, sesame oil,ethyl oleate, or triglycerides may also be used. Other usefulformulations include suspensions containing viscosity enhancing agents,such as sodium carboxymethylcellulose, sorbitol, or dextran. Excipientscan also contain minor amounts of additives, such as substances thatenhance isotonicity and chemical stability. Examples of buffers includephosphate buffer, bicarbonate buffer and Tris buffer, while examples ofpreservatives include thimerosal, or o-cresol, formalin and benzylalcohol. Standard formulations can either be liquid injectables orsolids which can be taken up in a suitable liquid as a suspension orsolution for injection. Thus, in a non-liquid formulation, the excipientcan comprise dextrose, serum albumin, preservatives, etc., to whichsterile water or saline can be added prior to administration.

In one embodiment of the present invention, a therapeutic compositioncan include an adjuvant. Adjuvants are agents that are capable ofenhancing the immune response of an animal to a specific antigen.Suitable adjuvants include, but are not limited to, cytokines,chemokines, and compounds that induce the production of cytokines andchemokines (e.g., granulocyte macrophage colony stimulating factor(GM-CSF), Flt-3 ligand, granulocyte colony stimulating factor (G-CSF),macrophage colony stimulating factor (M-CSF), colony stimulating factor(CSF), erythropoietin (EPO), interleukin 2 (IL-2), interleukin-3 (IL-3),interleukin 4 (IL-4), interleukin 5 (IL-5), interleukin 6 (IL-6),interleukin 7 (IL-7), interleukin 8 (IL-8), interleukin 10 (IL-10),interleukin 12 (IL-12), interferon gamma, interferon gamma inducingfactor I (IGIF), transforming growth factor beta, RANTES (regulated uponactivation, normal T cell expressed and presumably secreted), macrophageinflammatory proteins (e.g., MIP-1 alpha and MIP-1 beta), and Leishmaniaelongation initiating factor (LEIF)); bacterial components (e.g.,endotoxins, in particular superantigens, exotoxins and cell wallcomponents); aluminum-based salts; calcium-based salts; silica;polynucleotides; toxoids; serum proteins, viral coat proteins; blockcopolymer adjuvants (e.g., Hunter's Titermax™ adjuvant (Vaxcel™, Inc.Norcross, Ga.), Ribi adjuvants (Ribi ImmunoChem Research, Inc.,Hamilton, Mont.); and saponins and their derivatives (e.g., Quil A(Superfos Biosector A/S, Denmark). Protein adjuvants of the presentinvention can be delivered in the form of the protein themselves or ofnucleic acid molecules encoding such proteins using the methodsdescribed herein.

In one embodiment of the present invention, a therapeutic compositioncan include a carrier. Carriers include compounds that increase thehalf-life of a therapeutic composition in the treated animal. Suitablecarriers include, but are not limited to, polymeric controlled releasevehicles, biodegradable implants, liposomes, bacteria, viruses, othercells, oils, esters, and glycols.

One embodiment of the present invention is a controlled releaseformulation that is capable of slowly releasing a composition of thepresent invention into an animal. As used herein, a controlled releaseformulation comprises a composition of the present invention in acontrolled release vehicle. Suitable controlled release vehiclesinclude, but are not limited to, biocompatible polymers, other polymericmatrices, capsules, microcapsules, microparticles, bolus preparations,osmotic pumps, diffusion devices, liposomes, lipospheres, andtransdermal delivery systems. Other controlled release formulations ofthe present invention include liquids that, upon administration to ananimal, form a solid or a gel in situ. Preferred controlled releaseformulations are biodegradable (i.e., bioerodible).

A preferred controlled release formulation of the present invention iscapable of releasing a composition of the present invention into theblood of the treated animal at a constant rate sufficient to attaintherapeutic dose levels of the composition. The therapeutic compositionis preferably released over a period of time ranging from 1 to 12months. A controlled release formulation of the present invention iscapable of effecting a treatment preferably for at least 1 month,preferably for at least 3 months, preferably for at least 6 months,preferably for at least 9 months, and preferably for at least 12 months.

Acceptable protocols to administer therapeutic compositions in aneffective manner include individual dose size, number of doses,frequency of dose administration, and mode of administration.Determination of such protocols can be accomplished by those skilled inthe art. A suitable single dose is a dose that is capable of treating ananimal when administered one or more times over a suitable time period.For example, a preferred single dose of an inhibitor is from 1 microgram(μg) to 10 milligrams (mg) of the therapeutic composition per kilogrambody weight of the animal. Booster vaccinations can be administered from2 weeks to several years after the original administration. Boosteradministrations preferably are administered when the immune response ofthe animal becomes insufficient to protect the animal from disease. Apreferred administration schedule is one in which from 10 μg to 1 mg ofthe therapeutic composition per kg body weight of the animal isadministered from one to two times over a time period of from 2 weeks to12 months. Modes of administration can include, but are not limited to,subcutaneous, intradermal, intravenous, intranasal, oral, transdermal,intraocular, intranasal, conjunctival, and intramuscular routes. Methodsof administration for other therapeutic compounds can be determined byone skilled in the art, and may include administration of a therapeuticcomposition one or more times, on a daily, weekly, monthly or yearlyregimen; routes of administration can be determined by one skilled inthe art, and may include any route. A preferred route of administrationof an inhibitory compound when administering to fleas is a topical, or“spot-on” formulation administered to the body surface of the animal, sothat a flea would encounter the inhibitory compound when attached to theanimal; another preferred route of administration of an inhibitorycompound is an oral formulation that, when fed to an animal, would enterthe bloodstream of the animal, which would then be transferred to a fleawhile feeding from the animal.

A recombinant protein vaccine of the present invention comprises arecombinantly-produced flea peritrophin protein of the present inventionthat is administered to an animal according to a protocol that resultsin the animal producing a sufficient immune response to protect itselffrom a flea infestation. Such protocols can be determined by thoseskilled in the art.

According to one embodiment, a nucleic acid molecule of the presentinvention can be administered to an animal in a fashion to enableexpression of that nucleic acid molecule into a protective protein orprotective RNA (e.g., antisense RNA, ribozyme, triple helix forms or RNAdrug) in the animal. Nucleic acid molecules can be delivered to ananimal in a variety of methods including, but not limited to, (a)administering a naked (i.e., not packaged in a viral coat or cellularmembrane) nucleic acid as a genetic vaccine (e.g., as naked DNA or RNAmolecules, such as is taught, for example in Wolff et al., 1990, Science247, 1465-1468) or (b) administering a nucleic acid molecule packaged asa recombinant virus vaccine or as a recombinant cell vaccine (i.e., thenucleic acid molecule is delivered by a viral or cellular vehicle).

A genetic (i.e., naked nucleic acid) vaccine of the present inventionincludes a nucleic acid molecule of the present invention and preferablyincludes a recombinant molecule of the present invention that preferablyis replication, or otherwise amplification, competent. A genetic vaccineof the present invention can comprise one or more nucleic acid moleculesof the present invention in the form of, for example, a dicistronicrecombinant molecule. Preferred genetic vaccines include at least aportion of a viral genome, i.e., a viral vector. Preferred viral vectorsinclude those based on alphaviruses, poxviruses, adenoviruses,herpesviruses, picornaviruses, and retroviruses, with those based onalphaviruses, such as sindbis or Semliki forest virus, species-specificherpesviruses and poxviruses being particularly preferred. Any suitabletranscription control sequence can be used, including those disclosed assuitable for protein production. Particularly preferred transcriptioncontrol sequences include cytomegalovirus immediate early (preferably inconjunction with Intron-A), Rous sarcoma virus long terminal repeat, andtissue-specific transcription control sequences, as well astranscription control sequences endogenous to viral vectors if viralvectors are used. The incorporation of a “istrong” polyadenylationsignal is also preferred.

Genetic vaccines of the present invention can be administered in avariety of ways, with intramuscular, subcutaneous, intradermal,transdermal, conjunctival, intraocular, intranasal and oral routes ofadministration being preferred. A preferred single dose of a geneticvaccine ranges from 1 nanogram (ng) to 600 μg, depending on the route ofadministration and/or method of delivery, as can be determined by thoseskilled in the art. Suitable delivery methods include, for example, byinjection, as drops, aerosolized and/or topically. Genetic vaccines ofthe present invention can be contained in an aqueous excipient (e.g.,phosphate buffered saline) alone or in a carrier (e.g., lipid-basedvehicles).

A recombinant virus vaccine of the present invention includes arecombinant molecule of the present invention that is packaged in aviral coat and that can be expressed in an animal after administration.Preferably, the recombinant molecule is packaging- orreplication-deficient and/or encodes an attenuated virus. A number ofrecombinant viruses can be used, including, but not limited to, thosebased on alphaviruses, poxviruses, adenoviruses, herpesviruses,picomaviruses, and retroviruses. Preferred recombinant virus vaccinesare those based on alphaviruses (such as Sindbis virus), raccoonpoxviruses, species-specific berpesviruses and species-specificpoxviruses. An example of methods to produce and use alphavirusrecombinant virus vaccines are disclosed in U.S. Pat. No. 5,766,602 toXiong and Grieve, which is incorporated by reference herein in itsentirety.

When administered to an animal, a recombinant virus vaccine of thepresent invention infects cells within the immunized animal and directsthe production of a protective protein or RNA nucleic acid molecule thatis capable of protecting the animal from flea infestation as disclosedherein. For example, a recombinant virus vaccine comprising a fleaperitrophin nucleic acid molecule of the present invention isadministered according to a protocol that results in the animalproducing a sufficient immune response to protect itself from fleainfestation. A preferred single dose of a recombinant virus vaccine ofthe present invention is from 1×10⁴ to 1×10⁸ virus plaque forming units(pfu) per kilogram body weight of the animal. Administration protocolsare similar to those described herein for protein-based vaccines, withsubcutaneous, intramuscular, intranasal, intraocular, conjunctival, andoral administration routes being preferred.

A recombinant cell vaccine of the present invention includes recombinantcells of the present invention that express at least one protein of thepresent invention. Preferred recombinant cells for this embodimentinclude Salmonella, E. coli, Listeria, Mycobacterium, S. frugiperda,yeast, (including Saccharomyces cerevisiae and Pichia pastoris), BHK,CV-1, myoblast 68, COS (e.g., COS-7), Vero, MDCK and CRFK recombinantcells. Recombinant cell vaccines of the present invention can beadministered in a variety of ways but have the advantage that they canbe administered orally, preferably at doses ranging from 10⁸ to 10¹²cells per kilogram body weight. Administration protocols are similar tothose described herein for protein-based vaccines. Recombinant cellvaccines can comprise whole cells, cells stripped of cell walls or celllysates.

The efficacy of a therapeutic composition of the present invention toprotect an animal from flea infestation can be tested in a variety ofways including, but not limited to, detection of protective antibodies(using, for example, proteins or mimetopes of the present invention),detection of cellular immunity within the treated animal, or challengeof the treated animal with the fleas to determine whether the treatedanimal is resistant to infestation. Challenge studies can include directadministration of fleas to the treated animal. La one embodiment,therapeutic compositions can be tested in animal models such as mice.Such techniques are known to those skilled in the art.

As discussed herein, one therapeutic composition of the presentinvention includes an inhibitor of flea peritrophin protein activity,i.e., a compound capable of substantially interfering with the functionof a flea peritrophin protein. An inhibitor of flea peritrophin proteinactivity, or function, can be identified using flea peritrophin proteinsof the present invention. A preferred inhibitor of flea peritrophinprotein function is a compound capable of substantially interfering withthe function of a flea peritrophin protein and which does notsubstantially interfere with the function of host animal peritrophinproteins. As used herein, a compound that does not substantially inhibitor interfere with host animal peritrophin proteins is one that, whenadministered to a host animal, the host animal shows no significantadverse effects attributable to the inhibition of peritrophin and which,when administered to an animal in an effective manner, is capable ofprotecting that animal from flea infestation.

One embodiment of the present invention is a method to identify acompound capable of inhibiting flea peritrophin protein activity. Such amethod includes the steps of (a) contacting (e.g., combining, mixing) anisolated flea peritrophin protein of the present invention, with aputative inhibitory compound under conditions in which, in the absenceof the compound, the protein has flea peritrophin protein activity, and(b) determining if the putative inhibitory compound inhibits theactivity. Such conditions under which a flea peritrophin protein hasflea peritrophin protein activity include conditions in which a fleaperitrophin protein has a correct three-dimensionally folded structureunder physiologic conditions, i.e. physiologic pH, physiologic ionicconcentrations, and physiologic temperatures. Putative inhibitorycompounds to screen include antibodies (including fragments andmimetopes thereof), putative substrate analogs, and other, preferablysmall, organic or inorganic molecules.

A preferred method to identify a compound capable of inhibiting fleaperitrophin protein activity includes contacting an isolated fleaperitrophin protein of the present invention with a putative inhibitorycompound under conditions in which, in the absence of the compound, theprotein has flea peritrophin protein activity; and determining if theputative inhibitory compound inhibits the activity.

Another embodiment of the present invention is an assay kit to identifyan inhibitor of a flea peritrophin protein of the present invention.This kit comprises an isolated flea peritrophin protein of the presentinvention, and a means for determining inhibition of an activity of fleaperitrophin protein, where the means enables detection of inhibition.Detection of inhibition of flea peritrophin protein identifies aputative inhibitor to be an inhibitor of a flea peritrophin protein.Means for determining inhibition of a flea peritrophin protein include,for example, an assay system that detects binding of a putativeinhibitor to a flea peritrophin molecule, and an assay system thatdetects interference by a putative inhibitor of the ability of fleaperitrophin protein to hydrolyze a substrate. Means and methods aredescribed herein and are known to those skilled in the art.

The following examples are provided for the purposes of illustration andare not intended to limit the scope of the present invention. Thefollowing examples include a number of recombinant DNA and proteinchemistry techniques known to those skilled in the art; see, forexample, Sambrook et al., ibid.

EXAMPLE 1

This Example describes the isolation of RNA from the hindgut andMalpighian tubules (HMT) of Ctenocephalides felis and the use ofisolated RNA to construct subtracted and unsubtracted cDNA libraries.

Approximately 10,000 hindguts and Malpighian tubules were dissected fromequal numbers of cat blood fed and unfed adult C. felis with a male tofemale ratio of 1 to 4, and total RNA was extracted using a guanidineisothiocyanate lysis buffer and the standard procedure described bySambrook et al. Poly-A enriched mRNA was purified from total RNA aboveusing a mRNA Purification Kit, available from Pharmacia Biotech,Piscataway, N.J., following the manufacturer's protocol. The sameprocedures were used to extract total RNA and isolate poly-A enrichedmRNA from the dissected C. felis bodies following removal of HMT,referred to hereinafter as “non-HMT mRNA”.

Poly-A enriched mRNA was used to construct a cDNA library usingsubtractive hybridization and suppression PCR as follows. Subtractivehybridization and suppression PCR was conducted using a PCR-Select™ cDNASubtraction Kit, available from Clontech Laboratories, Inc., Palo Alto,Calif. according to the manufacturer's instructions. Briefly, this kituses subtractive hybridization and suppression PCR to specificallyamplify cDNA sequences that are present in the tester cDNA and absent inthe driver cDNA, thus enriching for tester-specific sequences. Theefficiency of the subtraction process can be assessed bysemi-quantitative PCR and by comparing the ethidium bromide stainingpatterns of the subtracted and unsubtracted samples on agarose gels asdescribed in section V.D. of the manufacturer's protocol. For thesemi-quantitative PCR, three genes with mRNAs known to be expressedoutside of the HMT tissue were used to test for specific subtraction.These genes encoded putative actin, N-aminopeptidase, and serineprotease proteins.

Subtractive hybridization and suppression PCR was conducted under thefollowing conditions. Two micrograms (μg) of HMT mRNA was used as thetemplate for synthesis of the tester material and 2 μg of non-HMT mRNAwas used as template for synthesis of the driver material in thisreaction. The number of cycles used in the selective amplification stepswas optimized using the manufacturer's protocols. Optimization resultedin the use of 24 rather than the standard 27 cycles of primary PCR incombination with 15 cycles of secondary PCR rather than the standard 12cycles.

The products from the suppressive PCR reaction were ligated into thepCR® 2.1 vector, available from Invitrogen, Carlsbad, Calif., using anOriginal TA Cloning® Kit, available from Invitrogen. The ligationreaction was then used to transform INVαF′ One Shot™ competent cells,available from Invitrogen, which were plated on Luria broth (LB) agarwith 50 micrograms per milliliter (μg/ml) ampicillin, available fromSigma-Aldrich Co., St. Louis, Mo., and 50 μg/ml5-bromo-4-chloro-3-indoyl β-D-galactopyranoside (X-Gal), available fromFisher Biotech, Fair Lawn, N.J. Transformed colonies were amplified andthe DNA isolated using the standard alkaline lysis procedure describedby Sambrook et al., ibid.

Automated cycle sequencing of DNA samples was performed using an ABIPRTSM™ Model 377, available from Perkins Elmer, with XL upgrade DNASequencer, available from PE Applied Biosysterns, Foster City, Calif.,after reactions were carried out using the PRISM™ Dye Terminator CycleSequencing Ready Reaction Kit or the PRISM™ dRhodamine Terminator CycleSequencing Ready Reaction Kit or the PRISM™ BigDye™ Terminator Cyclesequencing Ready Reaction Kit, available from PE Applied Biosystems,following the manufacturer's protocol, hereinafter “standard sequencingmethods”. Sequence analysis was performed using SeqLab, using defaultparameters. Each sequence read was trimmed of vector sequence at eitherend and submitted for a search through the National Center forBiotechnology Information (NCBI), National Library of Medicine, NationalInstitute of Health, Baltimore, Md., using the BLAST network. Thisdatabase includes SwissProt+PIR+SPupdate+GenPept+GPUpdate+PDB databases.The search was conducted using the xBLAST function, which compares thetranslated sequences in all 6 reading frames to the protein sequencescontained in the database.

An unsubtracted HMT cDNA library was constructed as follows.Approximately 10,000 HMT tissues were dissected from equal numbers ofunfed and cat blood-fed adult C. felis with a male to female ratio of1:4. Total RNA was extracted using a guanidine isothiocyanate lysisbuffer and procedures described in Sambrook et al., followed byisolation using a mRNA purification kit, available from Pharmacia,according to the manufacturer's protocols. The library was constructedwith 5 μg of isolated mRNA using a ZAP-cDNA® cDNA synthesis kit, andpackaged using a ZAP-cDNA® Gigapack® gold cloning kit, both availablefrom Stratagene, La Jolla, Calif. The resultant HMT library wasamplified to a titer of 5×10⁹ plaque forming units per milliliter(pfu/ml). Single clone excisions were performed using the Ex-Assist™helper phage, available from Stratagene, and used to create doublestranded plasmid template for sequencing using the manufacturer'sprotocols with the following exceptions. Following incubation of theSOLR cells with the cleared phage lysate, the mixture was used toinoculate LB broth, and the mix was incubated overnight and tensubjected to mini-prep plasmid preparation and sequencing as describedfor the subtracted HMT library above.

EXAMPLE 2

This example describes the production of a C. felis cDNA pool by RapidAmplification of cDNA Ends (RACE cDNA pool).

Total RNA was extracted from adult fed and unfed fleas as follows.Approximately 1000 adult fed fleas and 1000 adult unfed fleas werefrozen on dry ice and separately ground into powder using a mortar andpestle and total RNA was extracted from each powder as follows. Ten mlof solution D (4 M guanidine isothiocyanate, 25 mM Sodium Citrate pH7.0, 1.5% Sarcosyl, 0.5 M 2-mercaptoethanol) were added to the powderand the suspension was mixed by shaking. One ml of 2M sodium acetate, pH4.0 and 3 ml of pH 4.7 phenol/chloroform/isoamyl alcohol (125:24:1),available from Sigma, were added and the suspension was mixed on avortex shaker then incubated on ice for 15 minutes. Followingincubation, the mixture was centrifuged at 10,000×g for 20 minutes andthe supernatant was removed and extracted twice with pH 4.7phenol/chloroform/isoamyl alcohol. Next, an equal volume of isopropanolwas added to the supernatant and incubated at −20° C. for 2 hoursfollowed by centrifugation at 10,000×g for 20 minutes. Followingcentrifugation, the supernatant was removed and discarded and the pelletwas washed in 70% ethanol and allowed to dry at room temperature. Thepellet was resuspended in 10 mM Tris 1 mM EDTA pH 8.0. Spectrophotometeranalysis indicated that the yield of total RNA from unfed fleas was 1140μg and the yield from fed fleas was 1500 μg.

Six-hundred μg from each of the fed and unfed adult flea total RNAextractions were combined and mRNA was then extracted using a mRNAPurification Kit, available from Amersham Pharmacia Biotech, Piscataway,N.J., using the manufacture's protocol. Approximately 15-25 μg of mRNAwere isolated based on spectrophotometer analysis and ethidium bromidestaining. One μg of purified mRNA was used as template to construct aRACE cDNA pool using a SMART™ RACE cDNA Amplification Kit, availablefrom Clontech Laboratories, Inc., Palo Alto, Calif., according to themanufacture's instructions.

EXAMPLE 3

This example describes the cloning, sequencing, recombinant proteinexpression and purification of a C. felis peritrophin-like nucleic acidmolecule, referred to herein as PL1. This example also describes theexpression of PL1 mRNA in a variety of flea tissues.

A. Isolation of PL1 Nucleic Acid Molecules.

A TA clone from the HMT EST library described in Example 1 was sequencedusing standard sequencing methods and shown to have homology to achitinase-like gene from Bombyx mori (silkworm). This clone was digestedwith EcoRI to excise an insert 429 nucleotides in length, referred to asperitrophin-like molecule 1 (PL1) nucleic acid molecule nCfPL1₄₂₉. Theinsert was isolated by gel purification using a Gel Purification kit,available from Qiagen, Valencia, Calif. Approximately 50 ng of purifiednCfPL1₄₂₉ was used to construct a ³²P α-dATP labeled DNA probe using aMegaprime DNA labeling kit, available from Amersham, using themanufacturer's protocols.

The ³²P α-dATP labeled probe was used in a plaque lift hybridizationprocedure to isolate a clone from the HMT lambda-ZAP unsubtracted cDNAlibrary described in Example 1 as follows. Filters were hybridized with1×10⁶ counts per minute (cpm) per ml of the probe in 5×SSPE, (seeSambrook et al., ibid.), 1.2% sodium dodecyl sulfate (SDS), 0.1 mg/mlsalmon sperm DNA and 5×Denhardt's reagent, (see Sambrook et al., ibid.),at 55° C. for 14 hours. The filters were washed as follows: (a) 10minutes with 5×SSPE and 1% SDS, (b) 10 minutes with 2×SSPE and 1% SDS,(c) 10 minutes with 1×SSPE and 0.5% SDS, and (d) 10 minutes with0.5×SSPE and 1% SDS. All washes were conducted at 55° C. Plaques thathybridized strongly to the probe were isolated and subjected to in vivoexcision. In vivo excision was performed using the Stratagene Ex-Assist™helper phage system and protocols, to convert a positive plaque topBluescript™ plasmid DNA. Sequencing was conducted using standardsequencing methods following preparation of DNA with a Qiagen Qiaprep™spin mini prep kit using the manufacturer's instructions and restrictionenzyme digestion with 1 μl of 20 U/μl each of EcoRI and XhoI, availablefrom New England Biolabs, Beverly, Mass. Plaques that hybridizedstrongly to the probe were isolated and subjected to in vivo excision.In vivo excision was performed using the Stratagene Ex-Assist™ helperphage system and protocols, to convert a positive plaque to pBluescript™plasmid DNA, and sequencing was conducted following preparation of DNAwith a Qiagen Qiaprep™ spin mini prep kit using the manufacturer'sinstructions and restriction enzyme digestion with 1 μl of 20 U/μl eachof EcoRI and XhoI, available from New England Biolabs. A clone wasisolated from a primary plaque, containing a nucleic acid molecule of1096 base pairs, referred to herein as nCfPL1₁₀₉₆, the coding strand ofwhich has a nucleotide sequence denoted herein as SEQ ID NO:1. Thecomplement of SEQ ID NO:1 is represented herein as SEQ ID NO:3.Sequencing of nCfPL1₄₂₉ indicated that nCfPL1₄₂₉ shares 100% identitywith nucleotides 148 through 576 of SEQ ID NO:1.

Translation of SEQ ID NO:1 suggests that nucleic acid moleculenCfPL1₁₀₉₆ encodes a full-length chitin-binding protein of 272 aminoacids, referred to herein as PCfCfPL1₂₇₂, having an amino acid sequencerepresented by SEQ ID NO:2, assuming the initiation codon spans fromnucleotide 6 through nucleotide 8 of SEQ ID NO:1 and the terminationcodon spans from nucleotide 822 through nucleotide 824 of SEQ ID NO:1.The coding region encoding PCfPL1₂₇₂, is represented by nucleic acidmolecule nCfPL1₈₁₆, having a coding strand with the nucleic acidsequence represented by SEQ ID NO:4 and a complementary strand withnucleic acid sequence represented by SEQ ID NO:5. The amino acidsequence of PCfPL1₂₇₂, predicts that PCfPL1₂₇₂ has an estimatedmolecular weight of 30.6 kDa and an estimated pI of 7.3.

Comparison of amino acid sequence SEQ ID NO:2 with amino acid sequencesreported in GenBank indicates that SEQ ID NO:2 showed the most homology,i.e., 26% identity, with a Lucilia cuprina peritrophin-44 protein,GenBank Accession No. 407976. Comparison of SEQ ID NO:4 with nucleicacid sequences reported in GenBank indicates that SEQ ID NO:4 showed themost homology, i.e., 40%, with a Lucilia cuprina peritrophin-44 nucleicacid molecule, GenBank Accession number L25106. Percent identitycalculations were performed using the SeqLab software with defaultparameters.

B. Expression of a PL1 Nucleic Acid Molecule.

A nucleic acid molecule comprising-nucleotides 59 through 827 of SEQ IDNO:1, encoding a predicted mature flea PL1, was PCR amplified from thepBluescript™ clone described above as the template, using sense primerPL1-FE, having nucleotide sequence 5′CGG GAT CCT GCT GAC AGG AAT TCG CCCAC 3′, having a BamHI site indicated in bold, designated herein as SEQID NO:50, and anti-sense primer PL1-RE, having nucleotide sequence 5′CATGGT ACC CCT GGT TTA AGC CTT ACT TAG C 3′, having a KpnI site indicatedin bold, designated herein as SEQ ID NO:51. PCR reactions were performedusing standard PCR reaction and thermocycling conditions describedherein. The PCR product was digested with BamHI and KpnI and ligatedinto the vector pTrcHisB, available from Invitrogen, that had beendigested with BamHI and KpnI and treated with alkaline phosphatase. Theresulting recombinant molecule, referred to herein as pTrc-nCfPL1₇₆₉,was transformed into E. coli strain BL21, available from Novagen, toform recombinant cell E. coli:pTrc-nCfPL1₇₆₉. The recombinant cell wasgrown under standard conditions and then incubated in the presence of0.5 μM IPTG to induce expression of recombinant protein, predicted to bea protein of approximately 32 kDa. Expression of protein was confirmedusing Coomassie-blue-stained Tris-glycine gel and by Western blot usinga T7 tag antibody which showed expression of an 32-kDa protein. Theprotein product was purified by liquid chromatography using a HiTrap™chelating column charged with NiCl₂, available from Pharmacia, and wasshown to contain the His tag of the vector when subjected to automatedprotein sequencing by Edman degradation.

C. Northern Blot Analysis

A Northern Blot analysis was conducted as follows to determine whetherPL1 is expressed exclusively in HMT tissues. HMT tissues were dissectedfrom 1000 adult cat blood-fed C. felis having a male to female ratio of1:4. Total RNA was separately extracted from HMT tissues and theHMT-less carcasses that resulted from these dissections as follows. Thetissues were frozen at −80° C., ground into a powder with a mortar andpestle, and the powders were equally divided into four 2-ml eppendorftubes each containing 1 ml of lysis buffer. The lysis buffer contained 4M guanidinium thiocyanate, 25 mM sodium citrate, pH 7.0, 3% sarcosyl,0.5M 2-mercaptoethanol, 0.1% antifoam, and 1 mM aurintricarboxylic acid,all available from Sigma Chemical Corporation, St. Louis, Mo. Aftermixing, the tubes were spun at 14,000 rpm for 2 minutes and thesupernatants were transferred to separate 2 ml eppendorf tubescontaining 250 μl of phenol, available from Aldrich, Milwaukee, Wis.After mixing, the tubes were spun at 14,000 rpm for 5 minutes and thesupernatants were transferred to new 2-ml tubes. This process wasrepeated 3 times until no proteinaceous matter was visible at thephenol/lysis buffer interface, then 250 μl of chloroform was added toeach tube and the contents mixed and spun at 14,000 rpm for 5 minutesfollowed by transferring the supernatant to a new tube. A volume ofisopropanol equal to the volume of the supernatant was added to eachtube and the tubes placed on ice for 5 minutes. The tubes were then spunat 14,000 rpm at room temperature for 15 minutes, the supernatants wereremoved and discarded and the remaining RNA pellets were washed with 70%ethanol and dried. The RNA pellets were resuspended in 100 μl of TE (10mM Tris, 1 mM ethylenediaminetetraacetic acid (EDTA)). The quantity ofRNA in each tube was then determined using a spectrophotometer.

Approximately 10 μg of each RNA was added to separate tubes containing18.75 μl of loading buffer, which consists of 50% formamide, 16%formaldehyde, 17% water, 7% glycerol, 1×MOPS buffer (a 1:20 dilution of0.4 M 93-[N-morpholino]propanesulfonic acid (MOPS), 0.1 M sodiumacetate, and 20 mM EDTA), 10 μl ethidium bromide, and 10 μl bromophenolblue dye, all available from Sigma. The tubes were heated to 95° C. for2 minutes then placed on ice. The RNA samples were separated by gelelectrophoresis on a 1.5% agarose gel with 3.2% formaldehyde and 1×MOPSbuffer; the gel was then soaked in water for 30 minutes prior totransfer to remove excess formaldehyde. The gel was then transferredusing standard techniques, described by Sambrook et al., ibid, with10×SSPE as the transfer buffer onto Nytran® nylon membrane, availablefrom Schleicher and Schuell Inc., Keene, N.H. The membrane was UVcross-linked using the Stratalinker®, available from Stratagene, thenprehybridized at 42° C. in 50% formarnide, 5×SSPE, 1.2% SDS,5×Denhardtts reagent, 2.5 mM EDTA, and 100 μg/ml salmon sperm DNA. Aprobe comprising the PL1 nucleic acid molecule, nCfPL1₁₀₉₆ was labeledwith α-³²P-ATP using a DNA labeling kit, available from Amersham andadded to the buffer at a concentration of approximately 1×10⁶ cpm/ml,and allowed to hybridize for 18 hours at 42° C. The blot was then washedas follows: 10 minutes at 42° C. in 4×SSPE and 1% SDS; 10 minutes at 42°C. in 2×SSPE and 1% SDS; 10 minutes at 42° C. with 0.5×SSPE and 0.5×SDS;and 10 minutes at 42° C. with 0.25×SSPE and 0.25% SDS. The blot was thenexposed to film for 1 hour, and the film was developed using standardprocedures. Analysis of the developed film revealed that PL1 mRNA waspresent in HMT tissues but was not present in non-HMT tissues.

Northern Blot analysis was also conducted to determine whether PL1 mRNAis expressed only in certain stages of the flea life cycle and whetherPL1 mRNA expression is influenced by feeding. Total RNA was extracted asdescribed above from 1000 fleas at each of the following flea lifestages; eggs; first instar larvae; third instar larvae; wandering larvaeand pupae as well as from 1000 adult fleas under the following feedingconditions: unfed; fed on cat blood for 15 minutes; fed on cat blood for2 hours; fed on cat blood for 8 hours; and fed on cat blood for 24hours. Each RNA sample was separated by gel electrophoresis, transferredto nylon membrane and hybridized with α-³²P-ATP labeled nCfPL1₄₂₉ probeas described above. Analysis of the developed film revealed that PL1mRNA was detected in all adult fleas tested regardless of feedingconditions but was not detected in any of the non-adult life stages.

EXAMPLE 4

This Example describes the further isolation and characterization of aPeritrophin-like cDNA nucleic acid molecules, referred to herein as PL2.

A cDNA designated clone 2232-23 was isolated from the unsubtracted HMTlibrary as described in Example 1, denoted herein as SEQ ID NO:6.Analysis of clone 2232-23 indicated that the cDNA, denoted nCfPL2₄₄₅, is445 nucleotides in length. Translation of the coding strand ofnCfPL2₄₄₅, suggests that nucleic acid molecule nCfPL2₄₄₅ encodes apartial-length Peritrophin-like protein of 113 amino acids, referred toherein as PCfPL2₁₁₃, assuming a stop coding spanning nucleotides 342through 344 of nCfPL2₄₄₅.

Additional coding sequence corresponding to the 5′ end of nCfPL2₄₄₅ wasisolated by PCR performed using a RACE cDNA pool prepared as describedin Example 2 as template. A first PCR reaction was performed usingreverse primer PL2-R1, which is complementary to nucleotides 167 through187 of the nCfPL2₄₄₅ cDNA, having a nucleic acid sequence 5′GTC TGG AAGCTC AGG AAG AGG 3′, denoted herein as SEQ ID NO:52, in conjunction withforward Adapter Primer 1, having a nucleic acid sequence 5′CCA TCC TAATAC GAC TCA CTA TAG GGC 3′, denoted herein as SEQ ID NO:53, under thefollowing thermocycling conditions: (1) 94° C. for 30 seconds, (2) 5cycles of 94° C. for 10 seconds and 72° C. for 4 minutes, (3) 5 cyclesof 94° C. for 10 seconds 70° C. for 4 minutes, and (4) 25 cycles of 94°C. for 10 seconds then 68° C. for 4 minutes The product of this reactionwas diluted 1:50 and used as template for a second PCR reaction asfollows. Forward adapter primer 2, having nucleic acid sequence 5′ACTCAC TAT AGG GCT CGA GCG GC 3′, denoted herein as SEQ ID NO:54, was usedwith reverse primer PL2-R2, which is complementary to nucleotides 29-52of the nCfPL2₄₄₅, cDNA, having a nucleic acid sequence 5′GTA ATA TGC GTGACA ATC GTG TGG 3′, denoted herein as SEQ ID NO:55, using thethermocycling conditions described for the first PCR reaction. Theresulting product was gel purified to reveal a distinct bandcorresponding to a nucleic acid molecule of approximately 900 bp inlength. The fragment was then ligated into the pCR II TA Cloning vector,available from Qiagen, and sequenced using an ABI PRISM 377 automaticDNA Sequencer. Sequencing revealed that nucleotides 791-835 of thefragment had 100% identity with nucleotides 1-45 of the nCfPL2₄₄₅ cDNA.The 900 nucleotide and 445 nucleotide sequences were aligned to form acontiguous sequence, denoted nCfPL2₁₂₇₉, which is 1279 nucleotides inlength, having a coding strand with nucleic acid sequence SEQ ID NO:7and a complementary sequence having SEQ ID NO:8. Translation of SEQ IDNO:7 suggests that nucleic acid molecule nCfPL2₁₂₇₉ encodes a nonfull-length Peritrophin-like protein of 391 amino acids.

In order to isolate additional sequence 5′ to SEQ ID NO:7, nested PCRreactions were performed using the RACE cDNA pool as template. For thefirst PCR, forward adapter primer AP1 (SEQ ID NO:53) was used withreverse primer PL2-R1 (SEQ ID NO:52) under standard PCR reactionconditions and the following thermocycling conditions: (1) 94° C. for 1minute, (2) 5 cycles of 94° C. for 20 seconds and 70° C. for 1 minute,(3) 5 cycles of 94° C. for 20 seconds and 68° C. for 1 minute, (4) 10cycles for 20 seconds and 66° C. for 1 minute. The products of thisreaction were diluted 1:50 in water and used as template for the second,nested PCR. The second PCR reaction used forward adapter primer AP2 inconjunction with reverse primer PL2-R5, which is complementary tonucleotides 70-93 of SEQ ID NO:7, having a nucleotide sequence 5′CGG TGCAAG TTA TAG AAC CTT CCG 3′, denoted herein as SEQ ID NO:56 understandard PCR reaction conditions using the following thermocyclingconditions: (1) 94° C. for 1 minute, (2) 5 cycles of 94° C. for 20seconds and 70° C. for 1 minute, (3) 5 cycles of 94° C. for 20 secondsand 68° C. for 1 minute, (4) 40 cycles of 94° C. for 20 seconds and 66°C. for 1 minute. The products of this reaction were separated by agarosegel electrophoresis and a band approximately 279 nucleotides in lengthwas excised from the gel and purified. The fragment, referred to asnCfPL2₂₇₉, having a coding nucleic acid sequence designated SEQ ID NO:9and a complementary sequence designated SEQ ID NO:10, was then ligatedinto the pCROII TA Cloning vector, available from Qiagen, and sequencedas described above. Sequencing revealed that nucleotides 228-279 ofnCfPL2₂₇₉ were identical to nucleotides 42-93 of SEQ ID NO:7, however,nucleotides 186-228 of nCfPL2₂₇₉ had no significant similarity to SEQ IDNO:7. This discrepancy may be the result of alternative RNA splicing ormay be an artifact of the cDNA pool. To determine the reason for thisdiscrepancy, additional fragments corresponding to this region wereisolated by PCR from flea cDNA libraries from adult midguts, hindgut andMalpighian tubules and mixed instar larvae using techniques describedherein. Sequence analysis of fragments obtained from these librariesrevealed that these fragments were identical in sequence to the sequenceof nCfPL2₂₇₉, therefore, the region of SEQ ID NO:7 which did not alignto nCfPL2₂₇₉ was deemed to be an artifact and was not used in subsequentalignments.

The PL2 sequences described above were aligned to form a contiguoussequence, denoted nCfPL2₁₄₆₅, which is 1465 nucleotides in length,having a coding strand with nucleic acid sequence SEQ ID NO:11 and acomplementary sequence having SEQ ID NO:13. Translation of SEQ ID NO:11suggests that nucleic acid molecule nCfPL2₁₄₆₅ encodes a full-lengthPeritrophin-like protein of 453 amino acids, referred to herein asPCfPL2₄₅₃, having an amino acid sequence represented by SEQ ID NO:12,assuming an initiation codon spanning from nucleotide 3 throughnucleotide 5 of SEQ ID NO:11 and a termination codon spanning fromnucleotide 1362 through nucleotide 1364 of SEQ ID NO:11. The codingregion encoding PCfPL2₄₅₃, is represented by nucleic acid moleculenCfPL2₁₃₅₉, having a coding strand with the nucleic acid sequencerepresented by SEQ ID NO:14 and a complementary strand with nucleic acidsequence represented by SEQ ID NO:15. The amino acid sequence of SEQ IDNO:12, predicts that PCfPL2₄₅₃ has an estimated molecular weight of 49kDa and an estimated isoelectric point (pI) of 4.7.

Comparison of amino acid sequence SEQ ID NO:12 with amino acid sequencesreported in GenBank indicates that SEQ ID NO:12 showed the mosthomology, i.e., 28% identity, with a Drosophila melanogaster locusAE003474 protein (Accession # AAF47629). Comparison of SEQ ID NO:14 withnucleic acid sequences reported in GenBank indicates that SEQ ID NO:14showed the most homology, i.e., 50% identity, with a Penaeussemisulcatus (a crustacean) peritrophin-like protein 1 cDNA (Accession #AF095580). Percent identity calculations were performed using the SeqLabsoftware with default parameters.

EXAMPLE 5

This Example describes the further characterization and expression of aflea Peritrophin-like sequence cDNA, referred to herein as PL3.

A. Isolation of PL3 Nucleic Acid Molecules.

A cDNA designated clone 2240-17 was isolated from the unsubtracted HMTlibrary as described in Example 1. Analysis of clone 2240-17 indicatedthat the cDNA, denoted nCfPL3₃₈₇, is 387 nucleotides in length, having acoding strand with nucleic acid sequence SEQ ID NO:16 and acomplementary sequence having SEQ ID NO:18. Translation of SEQ ID NO:16suggests that nucleic acid molecule nCfPL3₃₈₇ encodes a full-lengthPeritrophin-like protein of 81 amino acids, referred to herein asPCfPL3₈₁, having an amino acid sequence represented by SEQ ID NO:17,assuming the initiation codon spans from nucleotide 20 throughnucleotide 22 of SEQ ID NO:16 and the termination codon spans fromnucleotide 263 through nucleotide 265 of SEQ ID NO:16. The coding regionencoding PCfPL3₈₁, is represented by nucleic acid molecule nCfPL3₂₄₃,having a coding strand with the nucleic acid sequence represented by SEQID NO:19 and a complementary strand with nucleic acid sequencerepresented by SEQ ID NO:20. The amino acid sequence of SEQ ID NO:17,predicts that PCfPL3₈₁, has an estimated molecular weight of 9.1 kDa andan estimated isoelectric point (pI) of 3.64.

Comparison of amino acid sequence SEQ ID NO:17 with amino acid sequencesreported in GenBank indicates that SEQ ID NO:17 showed the mosthomology, i.e., 34.2% identity, with a Anopheles gambiae peritrophin 1protein (Accession # AAC39127). Comparison of SEQ ID NO:19 with nucleicacid sequences reported in GenBank indicates that SEQ ID NO:19 showedthe most homology, i.e., 37% identity, with a Anopheles gambiae chlorideintracellular channel 2 (Accession # AF030431). Percent identitycalculations were performed using the SeqLab software with defaultparameters.

B. Expression of a PL3 Protein.

In order to express a PL3 protein, the entire coding region wasamplified by PCR and then ligated into the E. coli expression vectorpTrcHisB, available from Invitrogen, as follows. Forward primer PL3FE,which corresponds to nucleotides 70-93 of SEQ ID NO:16, having thesequence 5′CGG GAT CCC GAA TAT GCT GAC GTA GAT GTG TG 3′, denoted SEQ IDNO:57, and having a BamHI restriction endonuclease site indicated inbold, was used in conjunction with reverse primer PL3RE, which iscomplementary to nucleotides 245-269 of SEQ ID NO:16, having thesequence 5′ GGA ATT CTG TTT TAT TCT GGT TGG TAA CAT TC 3′, denotedherein as SEQ ID NO:58 and having an EcoRI restriction endonuclease siteindicated in bold, in a PCR reaction using SEQ ID NO:16 as the templateunder standard PCR reaction conditions and the following thermocyclingconditions: (1) 94° C. for 30 seconds, (2) 25 cycles of 94° C. for 10seconds, 55° C. for 10 seconds and 72° C. for 3 minutes. The reactionproduct was separated on a 1.5% agarose gel, and a band corresponding toan approximately 200 nucleotide molecule, as visualized by agarose gelelectrophoresis and ethidium bromide staining, was cut from the gel andpurified using a QIAquick Gel Extraction Kit, available from Qiagen.

The product of the PCR reaction was the digested with BamHI and EcoRIrestriction endonucleases, available from New England BioLabs, Inc. for18 hours at 37° C., purified using the QIAquick Nucleotide Removal Kit,available from Qiagen, and ligated into the vector pTrcHisB which hadbeen similarly digested, treated with shrimp alkaline phosphatase,available from New England BioLabs, Inc., for 30 minutes at 37° C., andpurified. Following standard transformation procedures into E. coliBL-21 competent cells, a bacterial clone containing the plasmidpTrcPL3₂₀₀ was isolated. DNA sequence analysis of the clone confirmedthat nucleotides 70 through 269 of SEQ ID NO:16 had been successfullyligated into the pTrcHisB expression vector in frame with the N-terminalT7 Tag epitope encoded by the vector. The recombinant protein encodedthereby is predicted to be 97 amino acids in length (including the T7Tag) and have a molecular mass of 10.9 kDa, including the T7 Tag, andhave a pI of 4.08.

The 97 amino acid recombinant PL3 protein described above was expressedas follows. Five mls of Luria broth were innoculated with a glycerolstock of E. coli BL-21 competent cells, available from Novagen, Madison,Wis., that had been transformed with the pTrcPL3₂₀₀ plasmid prepared asdescribed above and allowed to grow overnight at 37° C. under selectionwith 100 μg/ml ampicillin. A 1-ml aliquot of this culture was then usedto inoculate 10 mls of fresh Luria broth containing 100 μg/ml ampicillinand the culture was allowed to grow to an approximate OD reading of 0.5.A 1 ml aliquot of the culture was removed, the cells were pelleted bycentrifugation and the supernatant discarded. The cells were resuspendedin a solution of 100 μl PBS and 100 μl of 2×SDS-PAGE loading buffer (100mM Tris pH 6.8, 4% SDS, 20% glycerol, 0.02% bromophenol blue, and 10%2-mercaptoethanol). Following removal of the 1 ml aliquot describedabove, IPTG was added to the remaining 9 ml culture to a finalconcentration of 5 mM of IPTG, the culture was incubated at 37° C. foran additional 60 minutes, 1 ml was removed and the OD measured atapproximately 0.6. The cells in this 1 ml sample were then pelleted bycentrifugation and resuspended in a solution of 120 μl of PBS and 120 μlof SDS-PAGE loading buffer. Equal volumes of the IPTG-induced anduninduced lysates were loaded onto a 14% Tris-Glycine SDS-PAGE gel,available from Novex, San Diego, Calif. Following electrophoresis, theproteins were transferred from the SDS-PAGE gel to a nitrocellulosemembrane and a Western blot analysis was performed using the T7 tagantibody, available from Novagen, which revealed an approximately 18 kDaprotein was induced by IPTG. The fact that the recombinant nCfPL3₂₀₀protein ran at a higher molecular weight than predicted is consistentwith previous published results for other peritrophin proteins, and isthought to be due in part to the characteristically low pI of theseproteins; See Tellam et al., 1999, Insect Biochemistry and MolecularBiology, 29:87-101. Sequence analysis of this protein indicates that itcontained the N-terminal T7 Tag encoded by the vector.

Four flasks, each containing 1 liter of Luria broth with 100 μg/mlampicillin were inoculated with a starter culture of 5 ml of E. coliBL-21 cells transformed with the pTrcnCfPL3₂₀₀ plasmid as describedabove. The cultures were allowed to grow at 37° C. until the opticaldensity reached approximately 0.500, at which time a 1 ml aliquot wasremoved from each flask as the pre-induction sample. IPTG was added toeach 1 liter flask to a final concentration of 0.5 mM and the culturesallowed to grow at 37° C. for 135 additional minutes, at which time a 1ml aliquot was removed from each flask as the post-induction sample. The1 ml aliquots were centrifuged, the supernatants were discarded and thepellets were resuspended in 100 μl 2×SDS-PAGE loading buffer per each0.5 optical density units measured. The pre-induction and post inductionsamples were then tested for recombinant PL3 protein expression usingstandard Western blot techniques and the T7 Tag antibody. A proteinrunning at approximately 18 kDa was detected in the post-induced but notin the pre-induced samples.

The cells from the remaining 4 liters of culture were centrifuged, thesupernatants were discarded and the cell pellets were combined andresuspended in 120 mls of buffer A (50 mM Tris, PH 8.0, 20 mM NaCl, 1 mMphenylmethylsulfonyl fluoride (PMSF)). The sample was then passedthrough a microfluidizer five times then rocked at 4° C. for 20 minutes.The sample was then centrifuged for 30 minutes and the supernatantcollected. Western blot analysis of the supernatant showed that therecombinant nCfPL3₂₀₀ protein was soluble in the first buffer Aextraction. The buffer A supernatant containing the recombinantnCIPL3₂₀₀ protein was then further purified by a nickel column, a Q2anion exchange chromatography column, and cation exchangechromatography, using techniques well known to those of skill in theart.

EXAMPLE 6

This Example describes the characterization, expression, and NorthernBlot analysis of a Peritrophin-like sequence cDNA, referred to herein asPL4.

A. Isolation of PL4 Nucleic Acid Molecules

A cDNA designated clone 2244-71 was isolated from the unsubtracted HMTlibrary as described in Example 1. Analysis of clone 2244-71 indicatedthat the cDNA, denoted nCfPL4₉₆₀, is 960 nucleotides in length, having acoding strand with nucleic acid sequence SEQ ID NO:21 and acomplementary sequence having SEQ ID NO:22. Translation of SEQ ID NO:21suggests that nucleic acid molecule nCfPL4₉₆₀, encodes a partial-lengthPeritrophin-like protein of 285 amino acids. Additional sequence 5′ tonCfPL4₉₆₀ was isolated by PCR using the RACE cDNA pool described inExample 2 as the template, as follows. Adapter Primer 1, i.e. SEQ IDNO:53, was used as the forward primer in conjunction with reverse primerPL4-R1, which is complementary to nucleotides 229-251 of SEQ ID NO:21,having a nucleic acid sequence 5′GAT ATC CAC TTT GAT CAG CGC AC 3′,denoted herein as SEQ ID NO:59 in a PCR reaction under standard PCRreaction conditions and the following thermocycling conditions: (1) 94°C. for 30 seconds, (2) 5 cycles of 94° C. for 10 seconds and 72° C. for4 minutes, (3) 5 cycles of 94° C. for 10 seconds and 70° C. for 4minutes, (4) 25 cycles of 94° C. for 10 seconds then 68° C. for 4minutes. The products of this reaction were diluted 1:50 and used astemplate in a second PCR reaction using Adapter Primer 2, i.e. SEQ IDNO:54, as the forward primer and reverse primer PL4-R2, which iscomplementary to nucleotides 58-78 of SEQ ID NO:21, having a nucleicacid sequence 5′ GGT ACT ACT CCT GCT GCG GGC 3′, denoted herein as SEQID NO:60, using the thermocycling conditions described for the first PCRreaction. The products of this reaction were gel purified as previouslydescribed and the fragment was ligated into the pCR II TA Cloningvector, available from Qiagen, and sequenced to reveal a fragment ofapproximately 150 nucleotides in length. Sequence analysis revealed thatnucleotides 68-146 of the fragment had 100% identity with nucleotides1-79 of nCfPL4₉₆₀. The two sequences were aligned to form a contiguoussequence of 1029 nucleotides in length, referred to as nCfPL4₁₀₂₉,having a coding strand with SEQ ID NO:23 and a complementary strandhaving SEQ ID NO:24. However, the contiguous sequence did not appear toencode a starting methionine in the predicted protein sequence; thus, asecond attempt to isolate the remaining coding sequences at the 5′ endwas performed as follows. A first PCR reaction was performed withAdapter Primer 1 (SEQ ID NO:53) as the forward primer and PL4-R2 (SEQ IDNO:60) as the reverse primer using the RACE cDNA pool as the templateunder the thermocycling conditions described above. The products of thisreaction were diluted 1:50 and used as the template in a second PCRreaction which used Adapter Primer 2 (SEQ ID NO:54) as the forwardprimer and reverse primer PL4-R4, which is complementary to nucleotides58-80 of SEQ ID NO:23, having the nucleic acid sequence 5′CCG TCG ACATTA AAC TCA CCA TC 3′, denoted SEQ ID NO:61, under the thermocyclingconditions described for the first PCR reaction. The products of thisreaction were gel purified as previously described and the fragment wasligated into the pCR II TA Cloning vector, available from Qiagen, andsequenced to reveal a fragment of approximately 100 nucleotides inlength. Sequence analysis revealed that nucleotides 21-101 of thefragment had 100% identity with nucleotides 1-81 of SEQ ID NO:21. Thetwo sequences were aligned to form a contiguous sequence that is 1048nucleotides in length, referred to herein as nCfPL4₁₀₄₈, having a codingstrand with SEQ ID NO:25 and a complementary strand with SEQ ID NO:27.Translation of SEQ ID NO:25 suggests that nucleic acid moleculenCfPL4₁₀₄₈ encodes a full-length Peritrophin-like protein of 285 aminoacids, referred to herein as PCfPL4₂₈₅, having an amino acid sequencerepresented by SEQ ID NO:26, assuming the initiation codon spans fromnucleotide 19 through nucleotide 21 of SEQ ID NO:25 and the terminationcodon spans from nucleotide 874 through nucleotide 876 of SEQ ID NO:25.The coding region encoding PCfPL4₂₈₅ is represented by nucleic acidmolecule nCfPL4₈₅₅, having a coding strand with the nucleic acidsequence represented by SEQ ID NO:28 and a complementary strand withnucleic acid sequence represented by SEQ ID NO:29. The amino acidsequence of SEQ ID NO:26 predicts that PCfPL4₂₈₅ has an estimatedmolecular weight of 31.4 kDa and an estimated isoelectric point (pI) of6.99.

Comparison of amino acid sequence SEQ ID NO:26 with amino acid sequencesreported in GenBank indicates that SEQ ID NO:26 showed the mosthomology, i.e., 31.5% identity, with a Drosophila melanogaster Gaspprecourser (Accession # AAD09748). Comparison of SEQ ID NO:28 withnucleic acid sequences reported in GenBank indicates that SEQ ID NO:28showed the most homology, i.e., 39.4% identity, with a Drosophilamelanogaster Gasp precourser (Accession #AF070734). Percent identitycalculations were performed using the SeqLab software with defaultparameters.

B. Northern Blot Analysis

A Northern Blot analysis was conducted as described in Example 3 todetermine whether PL4 mRNA is expressed only in certain life stages ofthe flea life cycle and whether PL4 mRNA is expressed only in HMTtissue. Total RNA was extracted from eggs, first instar larvae, thirdinstar larvae, and wandering larvae, pupae, unfed adults, and adults fedon cat blood for 0.25, 2, 8, or 24 hours, respectively. In addition,total RNA was extracted from hindguts and Malpighian tubules extractedfrom 24-hour cat blood-fed adult fleas, and from the remaining bodyparts following the removal of hindguts and Malpighian tubules. Each RNAsample was separated by gel electrophoresis, transferred to nylonmembranes and hybridized with α-³²P-ATP labeled nCfPL4₉₆₀ using theconditions described in Example 3.

The results of the Northern blot assay were complex. Although stringentconditions were used, several bands with distinct expression patternswere seen. An approximately 1600 nucleotide message was detected in theegg, first instar, third instar and wandering larval stages only. Anapproximately 1500 nucleotide message was detected in all lifestages andadult fed timepoints, but with the strongest signals in the egg, firstinstar larval, and unfed adult stages. A third message, of approximately1200 nucleotides, was detected in the egg, first instar larval, pupal,and adult lifestages, including all unfed and fed adult timepoints. Allthree of the messages detected were seen only in the HMT tissues, andwere not detected in the carcass tissues.

The detection of three mRNAs instead of one may be the result of theexpression of three highly homologous transcripts. It has been reportedin the literature that peritrophin gene families have been found thatconsist of a number of highly related genes, See Schorderet et al.,1998, Insect Biochemistry and Molecular Biology 28, 99-111. It ispossible that these transcripts represent the products of such a familyor that the messages are the RNA products of alternative splicing from asingle gene locus.

The coding region of SEQ ID NO:25, was PCR amplified from the RACE cDNApool described above as the template, using sense primer PL4FE, havingnucleotide sequence 5′CGG GAT CCT TAT GAT GGT GAG TTT AAT GTC G 3′,which corresponds to nucleotides 75-96 of SEQ ID NO:25, having a BamHIsite indicated in bold, designated herein as SEQ ID NO:62, andanti-sense primer PL4RE, having nucleotide sequence 5′GGG GTA CCT TAATAT AAT TTA GOT TTC CTC TCG C 3′, which is complementary to nucleotides851-876 of SEQ ID NO:25, having a KpnI site indicated in bold,designated herein as SEQ ID NO:63. PCR reactions were performed usingthe following amplification cycles: (a) one cycle at 94° C. for thirtyseconds; (b) thirty cycles at 94° C. for twenty seconds, 68° C. forthirty seconds, and 72° C. for three minutes; and (c) one cycle at 72°C. for five minutes, in reactions containing 2.5 mM MgCl₂, 0.2 mM dNTPs,1 uM of each primer, 0.5 μl of 5 U/μl Taq polymerase, 1 μl of 1 μg/μltemplate, and 3 μl of 10× Taq buffer. The products of this reaction wereseparated on a 1.5% agarose gel, and the appropriate band cut from thegel and purified using the QIAquick Gel Extraction Kit, available fromQiagen, Valencia, Calif. The resulting nucleic acid molecule, referredto herein as nCfPL4₈₀₂, is approximately 802 nucleotides in length,having a coding strand designated SEQ ID NO:30 and a complementarystrand designated SEQ ID NO:32. Translation of SEQ ID NO:30 indicatesthat SEQ ID NO:30 encodes an approximately 266 amino acid protein,designated SEQ ID NO:31, assuming a first codon at nucleotides 2 through4 and a stop codon at nucleotides 800 through 802 of SEQ ID NO:30.

The purified PCR product was digested with BamHI and KpnI, purifiedusing a QIAquick Nucleotide Removal Kit, available from Qiagen, andligated into the vector pTrcHisB, available from Invitrogen, that hadbeen similarly purified, digested with BamHI and KpnI and treated withalkaline phosphatase. DNA sequence analysis of the clone confirmed thatnucleotides 75 through 876 of SEQ ID NO:25 had been successfully ligatedinto the pTrcHisB expression vector in frame with the N-terminal T7 Tagepitope encoded by the vector. The resulting recombinant molecule,referred to herein as pTrc-nCfPL4₈₉₄ (which includes the T7 tag), wastransformed into E. coli strain BL21, available from Novagen Inc.,Madison, Wis., to form recombinant cell E. coli:pTrc-nCfPL4₈₉₄.Recombinant molecule pTrc-nCfPL4₈₉₄ is predicted to encode a proteinincluding the T7 Tag of 298 amino acids in length, having a molecularmass of 32.8 kDa, and a pI of 5.97.

Recombinant cell E. coli:pTrc-nCfPL4₈₉₄ was grown as described inExample 5 and then incubated in the presence of 0.5 mMisopropylthio-β-galactoside (IPTG) to induce expression of recombinantprotein PCfPL4₂₉₈. Expression was confirmed by Western blot using a T7tag antibody, available from Novagen, which showed expression of an48-kDa protein. Sequence analysis of PCfPL4₂₉₈ indicates that itcontained the N-terminal T7 Tag encoded by the vector. The fact thatPCfPL4₂₉₈ ran at a higher molecular weight than predicted is consistentwith previous published results for other peritrophin proteins, and isthought to be due in part to the characteristically low pI of theseproteins, See Tellam et al. ibid.

Recombinant protein PCfPL4₂₉₈ was produced and purified as follows. Fourflasks containing 1 liter each of Luria broth with 100 ug/ml ampicillinwere innoculated with E. coli BL21 cells transformed with the pTrcPCfPL44₂₉₃ plasmid as described above. The cultures were allowed to growat 37° until the optical density (OD₆₀₀) reached approximately 0.500then a one ml aliquot was removed as the pre-induction sample. Next,IPTG was added to a final concentration of 0.5 mM and the culturesallowed to grow at 37° C. for 135 minutes. A one-ml aliquot was thenremoved as the post-induction sample. Both one-ml aliquots werecentrifuged to pellet the cells. The cells were resuspended in 100 μl2×SDS-PAGE loading buffer for each 0.5 optical density unit measured.The pre-induction and post induction samples were then tested forexpression of PCfPL4₂₉₈ using by Western blot with the T7 Tag antibodydescribed previously. A protein running at approximately 48 kDa wasdetected in the post-induced but not in the pre-induced samples.

The cells from the remaining 4 liters of culture were pelleted bycentrifugation and resuspended in 120 ml of Buffer A. The sample waspassed through a microfluidizer five times, rocked at 4° for 20 minutes,then centrifuged for 30 minutes and the supernatant collected. Westernblot analysis of the supernatant showed that the recombinant proteinPCfPL4₂₉₈ was soluble in Buffer A. Protein contained in the Buffer Asupernatant was then purified by nickel ion exchange chromatography andhydroxyapatite chromatography.

EXAMPLE 7

This Example describes the characterization and expression of a fleaPeritrophin-like sequence cDNA, referred to herein as PL5.

cDNA nucleic acid molecules 2109-28, 2234-75, 2241-70, 2164-22, 2183-05,and 2162-56, designated SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:35, SEQ IDNO:36, SEQ ID NO:37 and SEQ ID NO:38, respectively, were isolated fromthe unsubtracted HMT library as described in Example 1. Sequenceanalysis revealed that these clones contain overlapping sequence to forma 1513-nucleotide cDNA consensus sequence denoted nCfPL5₁₅₁₃, having acoding strand designated SEQ ID NO:39 and a complementary stranddesignated SEQ ID NO:41. Translation of the coding strand of nCfPL5₁₅₁₃suggests that nucleic acid molecule nCfPL5₁₅₁₃ encodes a partial-lengthPeritrophin-like protein of 339 amino acids, referred to herein asPCfPL5₃₃₉ with an amino acid sequence designated SEQ ID NO:40, assuminga stop codon at nucleotides 1018-1020 of nCfPL5₁₅₁₃, Protein PCfPL5₃₃₉has a predicted weight of 36.5 kDa and a predicted pI of 6.98.

Additional coding sequence 5′ to nCfPL5₁₅₁₃ was isolated by PCRperformed using a RACE cDNA pool prepared as described in Example 2 astemplate. A first PCR reaction was performed using reverse primerPL5-R1, which is complementary to nucleotides 513-533 of the nCfPL5₁₅₁₃cDNA, having nucleic acid sequence 5′GCG CAT GTA AAA CGA CCC ACG 3′,denoted herein as SEQ ID NO:64, in conjunction with the universal primermix from the SMART RACE cDNA amplification kit described in Example 2,which contains two primers, the first having nucleic acid sequence 5′CTAATA CGA CTC ACT ATA GGG CAA GCA GTG GTA ACA ACG CAG AGT 3′, and thesecond having nucleotide sequence 5′CTA ATA CGA CTC ACT ATA GGG C 3′,denoted herein as SEQ ID NO:65 and SEQ ID NO:66 respectively, under thefollowing thermocycling conditions: (1) 94° C. for 30 seconds, (2) 35cycles of 94° C. for 30 seconds 68 C for 30 seconds and 72° C. for 3minutes, (3) 72° C. for 7 minutes. The resulting product was gelpurified to reveal a distinct band corresponding to nucleic acidmolecule of approximately 850 nucleotides in length, referred to hereinas nCfPL5₈₅₀. Fragment nCfPL5₈₅₀ was purified using a QIAquick GelExtraction Kit, ligated into the pCR II TA Cloning vector, availablefrom Invitrogen, and sequenced using an ABI PRISM 377 automatic DNASequencer, available from Perkin Elmer. Sequencing revealed thatnucleotides 320-852 of nCfPL5₈₅₀ had 100% identity with nucleotides1-533 of the nCfPL5₁₅₁₃ cDNA. The two sequences were aligned to form acontiguous sequence, denoted nCfPL5₁₈₃₂, which is 1832 nucleotides inlength, having a coding strand with nucleic acid sequence SEQ ID NO:42and a complementary sequence having SEQ ID NO:44.

Translation of SEQ ID NO:42 suggests that nucleic acid moleculenCfPL5₁₈₃₂ encodes a full-length Peritrophin-like protein of 397 aminoacids, referred to herein as PCfCfPL5₃₉₇, having an amino acid sequencerepresented by SEQ ID NO:43, assuming a start codon spanning nucleotides146 through 148 and a stop codon spanning nucleotides 1337 through 1339of SEQ ID NO:42. The coding region encoding PCfCfPL5₃₉₇, is representedby nucleic acid molecule nCfPL5₁₁₉₁, having a coding strand with thenucleic acid sequence represented by SEQ ID NO:45 and a complementarystrand with nucleic acid sequence represented by SEQ ID NO:46. The aminoacid sequence of PCfCfPL5₃₉₇ predicts that PCfCfPL5₃₉₇ has an estimatedmolecular weight of 43.2 kDa and an estimated pI of 7.4.

Comparison of amino acid sequence SEQ ID NO:43 with amino acid sequencesreported in GenBank indicates that SEQ ID NO:43 showed the mosthomology, i.e., 28% identity with the protein encoded by a Drosophilamelanogaster cDNA Accession # CAA19845.2. Comparison of SEQ ID NO:45with nucleic acid sequences reported in GenBank indicates that SEQ IDNO:45 showed the most homology, i.e., 40% with a Trichoplusia ni insectintestinal mucin IIM22, GenBank Accession #AF000606. Percent identitycalculations were performed using the SeqLab software with defaultparameters.

A nucleic acid molecule comprising nucleotides 194 through 1354 of SEQID NO:42, encoding a predicted mature PL5 protein, was PCR amplifiedfrom the HMT RACE pool cDNA described above as follows. Sense primerPL5-FE, having nucleotide sequence 5′CGG GTA CCT TGG AGT CTC AAG AAC TAATTC 3′, which corresponds to nucleotides 194-215 of SEQ ID NO:42 andhaving a KpnI site indicated in bold, designated herein as SEQ ID NO:67,was used in conjunction with anti-sense primer PL5-RE, having nucleotidesequence 5′AGG AAT TCC ATA TAA CAC ACT CAC TAG GTA CAT GTA G 3′, whichis complementary to nucleotides 194-215 of SEQ ID NO:42 and having anEcoRI site indicated in bold, designated herein as SEQ ID NO:68 underthe following thermocycling conditions: (1) one cycle of 94° for 30seconds, (2) 30 cycles of 94° for 30 seconds, 68° for 30 seconds, and72° for 3 minutes, (3) one cycle of 72° for 7 minutes. The products ofthis reaction were separated on a 1.5% agarose gel, and the appropriateband cut from the gel and purified using the QIAquick Gel ExtractionKit, available from Qiagen. The resulting nucleic acid molecule,referred to herein as nCfPL5₁₁₆₁, has a coding strand designated SEQ IDNO:47 and a complementary strand designated SEQ ID NO:49. Translation ofSEQ ID NO:47 indicates that SEQ ID NO:47 encodes an approximately 381amino acid protein, the amino acid sequence of which is designated SEQID NO:48, assuming a first codon at nucleotides 1 through 3 and a stopcodon at nucleotides 1144 through 1146 of SEQ ID NO:47. The purifiedproduct was digested with KpnI and EcoRI and ligated into the vectorpTrcHisB, available from Invitrogen, that had been digested with KpnIand EcoRI and treated with alkaline phosphatase. An individual clone wasisolated and the DNA extracted and sequenced. DNA sequence analysis ofthe clone confirmed that nucleotides 194-1354 of SEQ ID NO:42, had beensuccessfully ligated into the pTrcHisB expression vector in frame withthe N-terminal T7 Tag epitope encoded by the vector The recombinantprotein, including the T7 Tag, is predicted to be 423 amino acids inlength, have a molecular mass of 45.9 kDa and have a pI of 6.36.

While various embodiments of the present invention have been describedin detail, it is apparent that modifications and adaptations of thoseembodiments will occur to those skilled in the art. It is to beexpressly understood, however, that such modifications and adaptationsare within the scope of the present invention, as set forth in thefollowing claims:

1. An isolated nucleic acid molecule comprising a nucleic acid sequencethat hybridizes with a polynucleotide sequence consisting of SEQ IDNO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30 or SEQ ID NO:32; whereinsaid nucleic acid molecule is at least 35 nucleotides in length andwherein said hybridization is performed under conditions comprising (1)hybridizing in a solution comprising 1×SSC in the absence of nucleicacid helix destabilizing compounds, at a temperature of 37° C. and (2)washing in a solution comprising 1×SSC in the absence of helixdestabilizing compounds, at a temperature of 47° C.
 2. The nucleic acidmolecule of claim 1, wherein nucleic acid sequence is at least 95%identical to a polynucleotide sequence selected from the groupconsisting of SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24,SEQ ID NO:25, SEQ ID NO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30,and SEQ ID NO:32.
 3. The nucleic acid molecule of claim 1, wherein saidnucleic acid sequence encodes a protein that has flea peritrophinactivity or that elicits an immune response against protein consistingof SEQ ID NO:26 or SEQ ID NO:31.
 4. The nucleic acid molecule of claim1, wherein said nucleic acid molecule comprises at least 35 contiguousnucleotides that are identical to at least 35 contiguous nucleotidesfrom a nucleic acid sequence selected from the group consisting of SEQID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, SEQ ID NO:25, SEQ IDNO:27, SEQ ID NO:28, SEQ ID NO:29, SEQ ID NO:30, and SEQ ID NO:32. 5.The nucleic acid molecule of claim 1, wherein said nucleic acid sequenceencodes a protein comprising an amino acid sequence selected from thegroup consisting of SEQ ID NO:26 and SEQ ID NO:31.
 6. A recombinantmolecule comprising a nucleic acid molecule as set forth in claim 1operatively linked to a transcription control sequence.
 7. A recombinantvirus comprising a nucleic acid molecule as set forth in claim
 1. 8. Arecombinant cell comprising a nucleic acid molecule as set forth inclaim
 1. 9. A composition comprising an excipient and an isolatednucleic acid molecule of claim
 1. 10. An isolated nucleic acid moleculecomprising a nucleic acid sequence selected from the group consistingof: (a) a nucleic acid sequence encoding a protein comprising an atleast 35 contiguous amino acid sequence identical to an at least 35contiguous amino acid sequence from SEQ ID NO:26 or SEQ ID NO:31; and(b) a nucleic acid sequence fully complementary to the nucleic acidsequence of (a).
 11. The isolated nucleic acid molecule of claim 10,wherein said nucleic acid sequence encodes a protein comprising an aminoacid sequence at least 95% identical to SEQ ID NO:26 or SEQ ID NO:31.12. The isolated nucleic acid molecule of claim 10, wherein said encodedprotein has flea peritrophin activity or that elicits an immune responseagainst protein consisting of SEQ ID NO:26 or SEQ ID NO:31.
 13. Theisolated nucleic acid molecule of claim 10, wherein said encoded proteincomprises SEQ ID NO:26 or SEQ ID NO:31.
 14. An isolated nucleic acidmolecule consisting of a nucleic acid sequence that encodes a proteincomprising an amino acid sequence at least 95% identical to SEQ ID NO:26or SEQ ID NO:31.
 15. The isolated nucleic acid molecule of claim 14,wherein said encoded protein has flea peritrophin activity or elicits animmune response against a protein consisting of SEQ ID NO:26 or SEQ IDNO:31.
 16. The isolated nucleic acid molecule of claim 14, wherein saidencoded protein comprises SEQ ID NO:26 or SEQ ID NO:31.